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putative_S-adenosylmethionine_decarboxylase

Euk-Vir

Heterosigma_akashiwo_virus_01

putative_S-adenosylmethionine_decarboxylase__YP_009507463__Heterosigma_akashiwo_virus_01__97195

Identity

Accession:
YP_009507463 ↗
Protein ID:
putative_S-adenosylmethionine_decarboxylase
Kingdom:
euk

Quality

75.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Raphidovirus› Heterosigma_akashiwo_virus_01

TaxID: 97195

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-126
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02675.22 best AdoMet_dc 53.6 3.60e-14 99.1% 76.6%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.80 69.0 6.89e-01 100.0% 89.7%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 31.0 4.07e-01 100.0% 69.7%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.67 54.0 5.50e-01 100.0% 87.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.67 50.0 5.50e-01 94.8% 97.8%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.67 53.0 5.61e-01 90.5% 96.1%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.67 61.0 4.69e-01 100.0% 56.5%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.65 52.0 4.43e-01 86.2% 99.0%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 41.0 4.78e-01 95.7% 91.4%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.65 49.0 4.29e-01 81.0% 100.0%
7ewsB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.65 58.0 4.50e-01 100.0% 64.3%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 47.0 5.00e-01 97.4% 86.4%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 54.0 5.08e-01 90.5% 96.5%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 49.0 4.65e-01 90.5% 66.7%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.64 51.0 5.29e-01 95.7% 90.7%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.64 58.0 4.40e-01 100.0% 56.7%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 40.0 4.67e-01 97.4% 96.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 44.0 3.89e-01 75.0% 75.8%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 53.0 4.65e-01 96.6% 98.8%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.60 43.0 4.45e-01 90.5% 77.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 38.0 3.35e-01 90.5% 44.6%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 46.0 3.55e-01 90.5% 61.5%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 48.0 4.08e-01 94.8% 90.6%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.55 38.0 3.74e-01 73.3% 76.2%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 40.0 3.15e-01 77.6% 85.8%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 41.0 3.17e-01 80.2% 86.5%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.53 41.0 3.52e-01 82.8% 84.9%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 37.0 3.58e-01 74.1% 73.5%
4hesA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 38.0 2.84e-01 74.1% 79.6%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 3.14e-01 90.5% 43.3%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 3.03e-01 92.2% 39.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 36.0 3.54e-01 74.1% 76.6%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 44.0 4.09e-01 94.8% 88.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4062329 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.87 73.0 7.70e-01 97.4% 97.1%
4985490 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.85 75.0 7.32e-01 100.0% 87.8%
5056708 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.85 74.0 7.22e-01 98.3% 85.6%
4978392 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.84 73.0 7.49e-01 96.6% 95.5%
4959532 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.84 74.0 7.52e-01 100.0% 94.8%
5042099 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.84 73.0 7.21e-01 100.0% 88.3%
5051699 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.82 70.0 7.20e-01 99.1% 94.5%
5061484 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.80 68.0 6.92e-01 99.1% 91.2%
4956970 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.78 66.0 6.68e-01 100.0% 92.2%
5016545 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.73 64.0 5.78e-01 94.8% 97.5%
None — 0.73 57.0 3.80e-01 93.1% 22.4%
3410192 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.70 61.0 5.75e-01 94.0% 96.4%
3938510 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 39.0 5.06e-01 75.0% 98.5%
3236394 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.70 49.0 5.22e-01 89.7% 81.7%
3284774 321.1.1.11 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126 0.68 62.0 4.29e-01 100.0% 37.3%
4160660 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.67 56.0 5.64e-01 87.9% 94.8%
3282852 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 57.0 5.13e-01 90.5% 78.1%
3280079 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.67 57.0 5.48e-01 92.2% 100.0%
3289656 331.3.1.26 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 0.66 56.0 5.13e-01 90.5% 81.3%
3974758 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.66 48.0 3.74e-01 95.7% 35.9%
3783819 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.66 60.0 4.19e-01 100.0% 44.1%
2771892 881.1.1.8 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.66 53.0 4.50e-01 87.1% 99.0%
4955776 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.65 52.0 4.82e-01 85.3% 100.0%
3285290 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 41.0 3.95e-01 73.3% 54.1%
4957957 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 49.0 4.16e-01 81.9% 98.9%
3952435 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 45.0 3.86e-01 73.3% 49.4%
3615545 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.63 48.0 5.04e-01 91.4% 89.5%
4011496 4019.1.1.0 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins 0.62 44.0 3.08e-01 74.1% 82.7%
3634934 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.61 44.0 3.03e-01 74.1% 85.6%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.61 45.0 4.94e-01 87.1% 95.8%
3870867 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 50.0 5.00e-01 89.7% 91.7%
3887190 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 43.0 2.97e-01 73.3% 85.7%
3893580 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.59 44.0 4.08e-01 90.5% 60.7%
5035338 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.58 50.0 4.43e-01 94.8% 94.1%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 4.32e-01 86.2% 74.2%
3721105 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 44.0 2.93e-01 100.0% 20.2%
3868838 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 47.0 4.21e-01 89.7% 96.2%
4474202 809.1.1.7 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.56 37.0 4.33e-01 71.6% 100.0%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 30.0 3.70e-01 75.0% 90.8%
3181532 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.55 44.0 3.03e-01 87.9% 86.6%
3726528 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 44.0 2.89e-01 100.0% 21.1%
2756224 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 46.0 4.64e-01 100.0% 91.3%
3597489 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 3.05e-01 87.9% 40.0%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 27.0 3.29e-01 70.7% 75.7%
None — 0.53 40.0 3.50e-01 81.9% 74.2%
3564821 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 43.0 3.96e-01 89.7% 97.4%
3480143 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 42.0 3.89e-01 88.8% 88.7%
4020967 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 45.0 3.09e-01 93.1% 87.9%
3733036 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 45.0 3.10e-01 94.0% 90.7%
3856864 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.51 39.0 3.65e-01 81.0% 97.2%
3593256 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 36.0 2.51e-01 73.3% 80.3%
4011797 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 44.0 3.05e-01 94.0% 89.6%
4020470 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 45.0 3.10e-01 95.7% 91.8%
3184579 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 44.0 3.03e-01 94.0% 90.9%
4532018 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 44.0 3.06e-01 94.0% 90.5%