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putative_VV_A18-like_helicase
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_VV_A18-like_helicase__YP_003969949__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969949 ↗
- Protein ID:
- putative_VV_A18-like_helicase
- Kingdom:
- euk
Quality
74.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
View cluster (178 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-460
Domain cluster:
rep: IMGVR_UViG_3300026211_000011-3300026211-Ga0208132_10019531__D46-252
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16203.12 best | ERCC3_RAD25_C | 27.8 | 2.00e-06 | 81.8% | 39.5% |
| PF00271.38 | Helicase_C | 31.3 | 2.90e-07 | 51.7% | 93.6% |
D2
medium
residues 1-73
Domain cluster:
rep: VV_A18_helicase__YP_009165288__Mollivirus_sibericum_Viruses.__X__D373-408_426-456
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dkiC01 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.59 | 42.0 | 3.01e-01 | 74.0% | 44.8% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 46.0 | 4.36e-01 | 86.3% | 84.9% |
| 6fdyU01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 42.0 | 4.07e-01 | 79.5% | 97.5% |
| 2mysA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 43.0 | 3.55e-01 | 83.6% | 48.0% |
| 5wt3A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 4.12e-01 | 90.4% | 86.2% |
| 4anjA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 44.0 | 3.82e-01 | 89.0% | 61.1% |
| 1wigA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.53 | 24.0 | 2.48e-01 | 94.5% | 38.4% |
| 1p50A02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.52 | 43.0 | 3.03e-01 | 97.3% | 79.6% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.50 | 39.0 | 3.96e-01 | 95.9% | 87.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261672 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.65 | 56.0 | 5.26e-01 | 97.3% | 91.1% |
| 4956777 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.64 | 54.0 | 5.26e-01 | 94.5% | 92.5% |
| 4187705 | 377.1.3.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS | 0.59 | 26.0 | 3.07e-01 | 89.0% | 55.1% |
| 4859815 | 3915.1.1.0 ↗ | a+b two layers › a+b domain in PB2 › a+b domain in PB2 › a+b domain in PB2 | 0.55 | 33.0 | 3.48e-01 | 86.3% | 68.3% |
| 5008624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.61e-01 | 83.6% | 66.7% |
| 3746655 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.53 | 40.0 | 2.35e-01 | 86.3% | 37.5% |
| 4944418 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 41.0 | 4.11e-01 | 87.7% | 98.7% |
| 5053793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.67e-01 | 91.8% | 66.1% |
| 3405771 | 321.1.1.3 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › ATP-gua_Ptrans | 0.52 | 44.0 | 3.05e-01 | 97.3% | 78.9% |
| 4270467 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.51 | 42.0 | 2.79e-01 | 93.2% | 37.0% |
| 3595218 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 36.0 | 2.32e-01 | 78.1% | 95.8% |
| 3652698 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.51 | 40.0 | 3.03e-01 | 89.0% | 73.0% |
| 4216191 | 3844.1.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C | 0.50 | 36.0 | 3.22e-01 | 75.3% | 62.9% |
| 3309081 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.50 | 37.0 | 3.26e-01 | 83.6% | 92.8% |
D3
medium
residues 74-252_462-477
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00176.30 best | SNF2-rel_dom | 31.6 | 1.30e-07 | 77.4% | 52.1% |
| PF00270.36 | DEAD | 51.8 | 1.10e-13 | 76.4% | 93.4% |
| PF04851.22 | ResIII | 97.3 | 1.30e-27 | 75.9% | 98.8% |