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putative
Euk-VirSonchus_yellow_net_nucleorhabdovirus
putative__NP_042282__Sonchus_yellow_net_nucleorhabdovirus__11307
Identity
- Accession:
- NP_042282 ↗
- Protein ID:
- putative
- Kingdom:
- euk
Quality
62.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-104
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.73 | 49.0 | 5.56e-01 | 71.4% | 95.0% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 51.0 | 4.97e-01 | 73.8% | 72.3% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 54.0 | 4.24e-01 | 81.0% | 45.8% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 48.0 | 4.10e-01 | 75.0% | 51.5% |
| 3dboB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.65 | 46.0 | 3.93e-01 | 72.6% | 76.2% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 43.0 | 4.66e-01 | 72.6% | 81.9% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.62 | 42.0 | 3.71e-01 | 86.9% | 46.8% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.62 | 47.0 | 4.68e-01 | 81.0% | 83.7% |
| 3tndA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.61 | 46.0 | 3.85e-01 | 77.4% | 65.9% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 45.0 | 3.59e-01 | 82.1% | 74.6% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.60 | 42.0 | 2.93e-01 | 72.6% | 77.5% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 37.0 | 3.86e-01 | 89.3% | 68.4% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.60 | 46.0 | 3.92e-01 | 83.3% | 72.3% |
| 3zfvA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 3.91e-01 | 88.1% | 68.6% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.59 | 42.0 | 4.32e-01 | 77.4% | 100.0% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 42.0 | 3.15e-01 | 76.2% | 82.6% |
| 3thxB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.58 | 43.0 | 3.60e-01 | 81.0% | 85.5% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 48.0 | 4.88e-01 | 100.0% | 98.8% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.56 | 48.0 | 4.77e-01 | 94.0% | 90.0% |
| 1h3fA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 39.0 | 3.05e-01 | 72.6% | 34.4% |
| 3fmsA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.55 | 46.0 | 3.94e-01 | 92.9% | 68.8% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 40.0 | 3.36e-01 | 78.6% | 59.9% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 42.0 | 3.69e-01 | 85.7% | 98.5% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.52 | 43.0 | 3.69e-01 | 91.7% | 74.3% |
| 3dz1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 43.0 | 2.95e-01 | 91.7% | 95.7% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.51 | 35.0 | 3.32e-01 | 91.7% | 57.7% |
| 3na8A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 42.0 | 2.91e-01 | 91.7% | 94.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476825 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 60.0 | 5.14e-01 | 78.6% | 95.2% |
| 3519328 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.78 | 51.0 | 4.89e-01 | 73.8% | 58.9% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.77 | 54.0 | 6.08e-01 | 78.6% | 93.8% |
| 3602776 | 605.6.1.12 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › PF27273 | 0.77 | 35.0 | 3.64e-01 | 81.0% | 46.3% |
| 3590799 | 191.1.1.12 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 | 0.76 | 58.0 | 5.05e-01 | 81.0% | 68.0% |
| 3984343 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.76 | 56.0 | 4.19e-01 | 77.4% | 34.0% |
| 5037154 | 4953.1.1.39 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › LPG_synthase_TM | 0.74 | 54.0 | 5.39e-01 | 75.0% | 82.4% |
| 3673805 | 148.1.3.285 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cyclin_C | 0.72 | 51.0 | 5.11e-01 | 73.8% | 80.0% |
| 3884008 | 5054.1.1.80 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 | 0.72 | 56.0 | 4.59e-01 | 84.5% | 76.1% |
| 4043122 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.71 | 48.0 | 3.50e-01 | 70.2% | 30.2% |
| 3741819 | 601.1.2.80 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 | 0.68 | 52.0 | 4.48e-01 | 82.1% | 81.5% |
| 4591229 | 190.1.1.8 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT | 0.68 | 47.0 | 4.59e-01 | 75.0% | 64.2% |
| 3507479 | 148.1.3.264 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PHO4 | 0.68 | 47.0 | 4.49e-01 | 71.4% | 67.0% |
| 3962191 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 47.0 | 4.64e-01 | 73.8% | 77.8% |
| 4975804 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.66 | 53.0 | 3.90e-01 | 86.9% | 63.2% |
| 3275812 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 53.0 | 4.76e-01 | 88.1% | 88.7% |
| 5042711 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 52.0 | 4.35e-01 | 88.1% | 85.5% |
| 5079341 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.64 | 46.0 | 3.94e-01 | 75.0% | 68.5% |
| 3932290 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.64 | 43.0 | 4.00e-01 | 70.2% | 60.9% |
| 3958231 | 628.1.1.0 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain | 0.63 | 45.0 | 3.55e-01 | 75.0% | 61.1% |
| 4982207 | 5076.2.1.18 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 | 0.63 | 57.0 | 4.13e-01 | 100.0% | 87.8% |
| 3407923 | 192.24.1.1 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical | 0.63 | 33.0 | 3.14e-01 | 85.7% | 43.0% |
| 5011113 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.63 | 46.0 | 3.68e-01 | 78.6% | 78.9% |
| 3730408 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.62 | 50.0 | 3.83e-01 | 89.3% | 60.0% |
| 5036215 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 48.0 | 4.40e-01 | 86.9% | 97.3% |
| 3988314 | 1002.1.1.4 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › ThrE_2 | 0.59 | 47.0 | 3.96e-01 | 86.9% | 89.6% |
| 3226273 | 551.1.1.1 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M | 0.58 | 40.0 | 3.33e-01 | 71.4% | 74.0% |
| 3631540 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 51.0 | 3.24e-01 | 100.0% | 66.7% |
| 3483587 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.58 | 41.0 | 3.01e-01 | 75.0% | 72.5% |
| 3461308 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 43.0 | 2.59e-01 | 84.5% | 11.6% |
| 4208319 | 223.1.1.83 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13 | 0.55 | 47.0 | 3.61e-01 | 96.4% | 91.0% |
| 3666876 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.55 | 38.0 | 3.31e-01 | 72.6% | 69.2% |
| 3961645 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.53 | 39.0 | 4.11e-01 | 81.0% | 97.3% |
| 4823728 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 44.0 | 4.14e-01 | 95.2% | 93.3% |
| 3532105 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.51 | 46.0 | 4.03e-01 | 100.0% | 72.8% |
D2
high
residues 186-329