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putative_alkylated_DNA_repair_protein
Euk-VirGolden_Marseillevirus
putative_alkylated_DNA_repair_protein__YP_009310288__Golden_Marseillevirus__1720526
Identity
- Accession:
- YP_009310288 ↗
- Protein ID:
- putative_alkylated_DNA_repair_protein
- Kingdom:
- euk
Quality
90.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Golden_Marseillevirus
TaxID: 1720526
Cluster
View cluster (250 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-110
Domain cluster:
rep: Alkylated_-methylated-_DNA_repair_protein__YP_009173278__Chrysochromulina_ericina_virus__455364__D18-98
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3btxA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.83 | 72.0 | 5.74e-01 | 100.0% | 49.5% |
| 4ie5A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.83 | 78.0 | 5.70e-01 | 100.0% | 53.8% |
| 2iuwA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.76 | 67.0 | 5.32e-01 | 100.0% | 49.8% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.59 | 28.0 | 2.55e-01 | 93.6% | 32.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881430 | 10.12.1.48 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FTO_NTD | 0.83 | 78.0 | 5.67e-01 | 100.0% | 52.9% |
| 3748779 | 10.12.1.48 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FTO_NTD | 0.82 | 77.0 | 5.40e-01 | 100.0% | 52.4% |
| None | — | 0.81 | 76.0 | 5.54e-01 | 100.0% | 53.5% | |
| None | — | 0.80 | 75.0 | 5.48e-01 | 100.0% | 53.1% | |
| 4616368 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.80 | 69.0 | 5.40e-01 | 100.0% | 45.9% |
| 3644051 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.78 | 72.0 | 5.53e-01 | 99.1% | 51.1% |
| 3889037 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.75 | 71.0 | 5.50e-01 | 100.0% | 53.2% |
| 4520542 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.63 | 56.0 | 4.06e-01 | 99.1% | 75.0% |
| 4059415 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.63 | 55.0 | 3.91e-01 | 99.1% | 69.9% |
| 5068720 | 306.4.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like | 0.59 | 27.0 | 3.34e-01 | 94.5% | 65.7% |
| 4929660 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.59 | 27.0 | 3.34e-01 | 95.5% | 65.7% |
| 7035 | 508.1.1.2 ↗ | a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › DUF3855 | 0.59 | 28.0 | 2.55e-01 | 93.6% | 32.2% |
D2
medium
residues 111-198
Domain cluster:
rep: alkylated_DNA_repair_protein__YP_009119480__Pandoravirus_inopinatum__1605721__D88-172
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03171.27 best | 2OG-FeII_Oxy | 25.6 | 1.70e-05 | 98.9% | 91.1% |
| PF13532.13 | 2OG-FeII_Oxy_2 | 77.3 | 2.70e-21 | 96.6% | 45.4% |