←Back to structures
putative_capsid
Euk-VirBeihai_barnacle_virus_12
putative_capsid__YP_009333371__Beihai_barnacle_virus_12__1922356
Identity
- Accession:
- YP_009333371 ↗
- Protein ID:
- putative_capsid
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 348-464
Domain cluster:
rep: putative_capsid_protein__YP_009345135__Wuhan_cricket_virus_2__1923697__D333-443
D2
medium
residues 100-209_319-347
Domain cluster:
rep: hypothetical_protein__YP_009329893__Hubei_diptera_virus_18__1922879__D128-243
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.56 | 39.0 | 4.17e-01 | 100.0% | 83.1% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 32.0 | 3.78e-01 | 88.5% | 89.8% |
| 3uitA01 | 1.20.1440.360 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.50 | 38.0 | 3.98e-01 | 96.4% | 87.3% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.50 | 27.0 | 2.63e-01 | 84.9% | 43.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4363280 | 601.1.2.53 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DGKD_4H | 0.53 | 36.0 | 3.43e-01 | 92.1% | 58.7% |
| 4248372 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.51 | 44.0 | 3.48e-01 | 93.5% | 74.6% |
| 4972034 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 36.0 | 3.55e-01 | 73.4% | 71.3% |
D3
medium
residues 210-318
Domain cluster:
rep: putative_capsid_protein__YP_009345135__Wuhan_cricket_virus_2__1923697__D200-298
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cemA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 37.0 | 3.19e-01 | 70.6% | 87.2% |