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putative_capsid_protein_2
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_capsid_protein_2__YP_003970031__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003970031 ↗
- Protein ID:
- putative_capsid_protein_2
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
View cluster (126 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 255-311_328-408_425-450
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04451.18 best | Capsid_NCLDV | 104.7 | 7.60e-30 | 100.0% | 91.3% |
D2
medium
residues 40-55_67-99_165-188_222-253
Domain cluster:
rep: major_capsid_Protein__YP_010084900__Shrimp_hemocyte_iridescent_virus__2039780__D57-67_83-106_186-212_256-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16903.13 best | Capsid_N | 31.8 | 1.50e-07 | 64.8% | 19.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.79 | 75.0 | 5.96e-01 | 99.0% | 98.9% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.54 | 27.0 | 2.99e-01 | 90.5% | 59.0% |
| 1b35C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.20e-01 | 94.3% | 69.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2995054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.78 | 73.0 | 5.57e-01 | 98.1% | 85.3% |
| 4850052 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.78 | 74.0 | 5.76e-01 | 100.0% | 95.1% |
| 3580756 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.63 | 57.0 | 4.60e-01 | 100.0% | 96.0% |
| 159110 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.54 | 27.0 | 2.99e-01 | 90.5% | 59.0% |
| 5047228 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 41.0 | 3.31e-01 | 81.0% | 100.0% |
| 1713715 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.52 | 45.0 | 3.29e-01 | 94.3% | 63.2% |
| 2099164 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.51 | 43.0 | 3.20e-01 | 94.3% | 69.5% |
| 3659281 | 10.2.1.72 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PNGaseA | 0.50 | 41.0 | 3.43e-01 | 88.6% | 92.4% |
D3
medium
residues 56-66_100-164_189-221
Domain cluster:
rep: major_capsid_protein__YP_004063519__Ostreococcus_tauri_virus_2__696472__D95-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16903.13 best | Capsid_N | 24.7 | 2.10e-05 | 68.8% | 21.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.74 | 69.0 | 5.64e-01 | 100.0% | 74.5% |
| 3d3aA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 39.0 | 3.61e-01 | 87.2% | 54.5% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 4.23e-01 | 84.4% | 78.7% |
| 4madA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 35.0 | 3.33e-01 | 89.0% | 53.0% |
| 4e8dA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 34.0 | 3.16e-01 | 88.1% | 53.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4850052 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.85 | 73.0 | 5.74e-01 | 89.0% | 70.9% |
| 2995198 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.83 | 69.0 | 5.61e-01 | 87.2% | 72.6% |
| 4883559 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.79 | 75.0 | 5.89e-01 | 100.0% | 71.4% |
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.79 | 75.0 | 5.78e-01 | 100.0% | 68.8% |
| 4830370 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.78 | 66.0 | 5.03e-01 | 89.9% | 53.2% |
| 4863940 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.76 | 60.0 | 5.34e-01 | 81.7% | 73.6% |
| 2995054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.75 | 71.0 | 5.47e-01 | 100.0% | 65.0% |
| 4850054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.75 | 58.0 | 4.91e-01 | 80.7% | 64.5% |
| 3242830 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.73 | 67.0 | 5.24e-01 | 100.0% | 77.3% |
| 2497010 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.73 | 67.0 | 5.23e-01 | 100.0% | 73.9% |
| 2389249 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 61.0 | 4.55e-01 | 100.0% | 73.0% |
| 184942 | 10.2.1.56 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N | 0.58 | 46.0 | 4.23e-01 | 84.4% | 78.7% |
| 5083351 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 44.0 | 3.96e-01 | 84.4% | 68.0% |
| 3940463 | 10.32.1.73 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 | 0.55 | 34.0 | 3.11e-01 | 89.9% | 46.9% |
| 4373864 | 10.32.1.73 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 | 0.54 | 37.0 | 3.29e-01 | 88.1% | 50.7% |
| 5033011 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 29.0 | 3.19e-01 | 72.5% | 65.6% |
| 3193810 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 42.0 | 3.70e-01 | 84.4% | 60.0% |