putative_capsid_protein

Euk-Vir

Primula_malacoides_virus_China_Mar2007

putative_capsid_protein__YP_003104769__Primula_malacoides_virus_China_Mar2007__479713

Identity

87.5 mean pLDDT

View cluster (9 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-46

PDB

D2 medium residues 51-177_293-337

PDB

Domain cluster: rep: putative_coat_protein__YP_009551640__Bipolaris_maydis_partitivirus_2__2483307__D88-220_329-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	164.5	5.80e-48	75.6%	20.0%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4c0aA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.64	37.0	4.45e-01	94.8%	83.9%
2hfiA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.59	32.0	3.70e-01	89.0%	71.5%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	30.0	3.44e-01	85.5%	73.8%
1e3mB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.51	27.0	2.91e-01	82.0%	54.6%
2vixA03	1.20.1280.240	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.51	31.0	3.70e-01	89.0%	89.4%
5h5mA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	28.0	3.17e-01	84.9%	66.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
162296	103.4.1.2 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M	0.52	29.0	3.38e-01	90.7%	76.7%

D3 medium residues 178-292_349-369

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	140.1	1.40e-40	98.5%	19.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mt1B02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.54	29.0	2.47e-01	87.5%	32.2%

D4 medium residues 338-348_370-392_445-539_606-673

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	95.7	4.00e-27	51.8%	14.6%
PF25666.2	Partiti_capsid	73.8	1.70e-20	37.1%	10.8%

D5 medium residues 416-444_578-605

PDB

Domain cluster: representative