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putative_capsid_protein
Euk-VirShuangao_insect_virus_7
putative_capsid_protein__YP_009179394__Shuangao_insect_virus_7__1746063
Identity
- Accession:
- YP_009179394 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
81.6
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-251
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dr3A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 48.0 | 4.04e-01 | 98.6% | 98.3% |
| 3gqhA02 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.52 | 18.0 | 3.02e-01 | 81.4% | 100.0% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.90e-01 | 95.0% | 90.9% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.51 | 24.0 | 3.21e-01 | 78.6% | 88.2% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.50 | 21.0 | 2.88e-01 | 90.0% | 75.8% |
| 3ozxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 45.0 | 3.73e-01 | 98.6% | 90.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3172109 | 5095.1.1.4 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › Flocculin | 0.58 | 19.0 | 3.41e-01 | 92.1% | 100.0% |
| 5077499 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 46.0 | 3.30e-01 | 92.1% | 99.0% |
| 3714446 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.53 | 46.0 | 3.60e-01 | 96.4% | 93.4% |
| 5069802 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.52 | 45.0 | 3.87e-01 | 96.4% | 94.0% |
| 3621895 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.52 | 45.0 | 3.51e-01 | 95.0% | 93.3% |
| 4442775 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.51 | 44.0 | 3.49e-01 | 92.1% | 68.6% |
| 5025126 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.51 | 45.0 | 3.84e-01 | 98.6% | 91.1% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.50 | 27.0 | 3.15e-01 | 90.7% | 72.0% |
D2
medium
residues 28-101
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.76 | 39.0 | 4.20e-01 | 82.4% | 57.1% |
| 3e5dA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.76 | 36.0 | 2.94e-01 | 91.9% | 26.4% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 46.0 | 2.78e-01 | 93.2% | 32.4% |
| 3pfeA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 44.0 | 3.03e-01 | 89.2% | 73.7% |
| 1t7lB01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.56 | 47.0 | 2.90e-01 | 87.8% | 35.2% |
| 4g26A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 49.0 | 3.30e-01 | 100.0% | 65.0% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 30.0 | 2.82e-01 | 83.8% | 42.7% |
| 3nuhB03 | 3.10.20.690 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 30.0 | 2.86e-01 | 83.8% | 47.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4872716 | 3121.1.1.4 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_TamA_1 | 0.59 | 34.0 | 3.23e-01 | 81.1% | 47.1% |
| 4541289 | 2002.1.1.154 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 | 0.57 | 47.0 | 2.88e-01 | 86.5% | 34.3% |
| 5075560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 32.0 | 2.48e-01 | 89.2% | 28.4% |
| 5009534 | 244.3.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C | 0.53 | 34.0 | 2.97e-01 | 91.9% | 43.6% |
| 3719600 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 42.0 | 3.00e-01 | 91.9% | 70.6% |
| 3734132 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.52 | 44.0 | 2.99e-01 | 100.0% | 75.6% |
| 3673402 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.51 | 44.0 | 2.54e-01 | 98.6% | 19.1% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 43.0 | 2.76e-01 | 97.3% | 47.5% |
| 4549700 | 7556.1.1.1 ↗ | a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C | 0.51 | 41.0 | 2.70e-01 | 90.5% | 68.7% |
| 3898432 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 38.0 | 3.53e-01 | 86.5% | 64.4% |
| 4673949 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 34.0 | 2.51e-01 | 83.8% | 25.2% |