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putative_capsid_protein
Euk-VirDaeseongdong_virus_2_Viruses.
putative_capsid_protein__YP_009182197__Daeseongdong_virus_2_Viruses.__X
Identity
- Accession:
- YP_009182197 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
76.0
mean pLDDT
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-228
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11729.15 best | Capsid-VNN | 69.7 | 3.40e-19 | 96.0% | 37.1% |
| PF00729.25 | Viral_coat | 27.7 | 3.20e-06 | 80.9% | 34.3% |
D2
high
residues 249-351
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.05e-01 | 89.3% | 33.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1696280 | 1.2.1.0 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain | 0.69 | 62.0 | 5.23e-01 | 100.0% | 73.7% |
| 1693525 | 1.2.1.3 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Capsid-VNN | 0.68 | 62.0 | 5.86e-01 | 100.0% | 83.7% |
| 3733455 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 30.0 | 3.06e-01 | 82.5% | 53.3% |
| 3334435 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.51 | 39.0 | 3.49e-01 | 84.5% | 73.5% |