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putative_capsid_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-11_Viruses.

putative_capsid_protein__YP_009237558__Lake_Sarah-associated_circular_virus-11_Viruses.__X

Identity

Accession:
YP_009237558 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

70.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-238
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02443.23 best Circo_capsid 100.7 2.20e-28 98.9% 82.1%
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.76 68.0 6.95e-01 98.9% 98.2%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.74 69.0 6.80e-01 100.0% 94.2%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 62.0 6.42e-01 100.0% 96.4%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 62.0 6.25e-01 100.0% 91.6%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 57.0 5.73e-01 100.0% 82.5%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 61.0 5.83e-01 100.0% 79.3%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.71 67.0 4.68e-01 100.0% 86.0%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 51.0 5.81e-01 96.1% 100.0%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 58.0 6.08e-01 100.0% 95.1%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 64.0 5.92e-01 100.0% 77.9%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 60.0 6.01e-01 100.0% 88.0%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 61.0 5.84e-01 100.0% 81.2%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 59.0 6.12e-01 99.4% 95.3%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 61.0 5.68e-01 100.0% 76.8%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 63.0 5.85e-01 100.0% 78.3%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 6.18e-01 100.0% 94.1%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 6.19e-01 100.0% 96.2%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 5.74e-01 100.0% 78.6%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.68 49.0 5.32e-01 100.0% 89.3%
3l4cA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.68 37.0 3.73e-01 90.6% 52.2%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.67 40.0 4.79e-01 96.1% 88.0%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 62.0 6.13e-01 100.0% 94.2%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 62.0 5.37e-01 100.0% 74.6%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 55.0 5.78e-01 100.0% 95.2%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 62.0 6.23e-01 100.0% 99.4%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 61.0 5.74e-01 100.0% 81.6%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 62.0 5.43e-01 100.0% 78.1%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 60.0 5.25e-01 100.0% 65.7%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 61.0 5.30e-01 100.0% 68.5%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.66 47.0 5.25e-01 100.0% 92.9%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 61.0 5.52e-01 100.0% 77.3%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 61.0 5.69e-01 100.0% 81.4%
7u6iA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.66 43.0 3.92e-01 98.9% 49.6%
2pn5A07 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 36.0 4.55e-01 97.8% 89.6%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 61.0 5.69e-01 100.0% 83.5%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 60.0 5.52e-01 100.0% 77.0%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 5.48e-01 98.9% 94.7%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 5.54e-01 100.0% 95.7%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 60.0 5.18e-01 100.0% 68.0%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.63 43.0 4.76e-01 97.8% 86.1%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 35.0 3.57e-01 91.1% 55.1%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 5.09e-01 96.7% 100.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 32.0 4.22e-01 98.3% 94.7%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 4.79e-01 100.0% 99.2%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 5.35e-01 99.4% 92.4%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 4.12e-01 98.3% 83.6%
2w1sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 40.0 4.48e-01 95.0% 86.3%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 5.24e-01 98.9% 91.0%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 4.96e-01 98.9% 84.7%
6v46A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.56 31.0 2.89e-01 96.1% 41.3%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.56 42.0 4.48e-01 98.9% 88.3%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 4.44e-01 96.7% 91.8%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 29.0 3.43e-01 83.3% 72.7%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 4.52e-01 96.7% 97.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 37.0 4.30e-01 97.2% 100.0%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 4.47e-01 98.9% 98.1%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 4.42e-01 97.2% 100.0%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 4.21e-01 96.7% 94.6%
3ks7A01 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.50 46.0 4.39e-01 100.0% 96.7%
2vovA00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.75e-01 93.9% 85.5%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.50 36.0 3.75e-01 95.6% 79.4%
4ae2B02 2.60.120.1000 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 4.41e-01 98.3% 97.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1878989 10.2.1.29 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.76 72.0 6.86e-01 100.0% 93.2%
3788711 10.32.1.243 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.76 47.0 5.74e-01 96.1% 95.7%
2990572 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.72 67.0 4.69e-01 100.0% 87.5%
5039010 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 44.0 5.12e-01 98.9% 85.4%
1687952 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.71 64.0 5.92e-01 100.0% 77.9%
3606027 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 50.0 5.53e-01 97.8% 89.7%
5038652 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 42.0 5.25e-01 97.2% 100.0%
4872939 10.2.1.13 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.69 60.0 5.76e-01 100.0% 80.9%
4945026 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 42.0 5.26e-01 98.3% 100.0%
3344591 10.2.1.81 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.68 51.0 4.90e-01 99.4% 67.8%
3314257 10.32.1.193 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.68 51.0 5.19e-01 100.0% 80.0%
3724772 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 48.0 5.40e-01 97.8% 93.6%
1713715 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.67 63.0 5.33e-01 100.0% 63.5%
140024 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.67 62.0 5.37e-01 100.0% 74.6%
2880697 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.67 62.0 5.21e-01 100.0% 65.0%
5082445 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 41.0 5.14e-01 95.6% 100.0%
2526957 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.67 62.0 5.28e-01 100.0% 64.9%
1213 10.2.1.44 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.67 62.0 5.43e-01 100.0% 78.1%
1204 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.66 61.0 5.24e-01 100.0% 63.2%
152483 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 61.0 5.23e-01 100.0% 64.3%
140694 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.65 60.0 5.40e-01 100.0% 77.6%
3620465 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 44.0 4.96e-01 97.2% 90.4%
3788140 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.65 41.0 4.54e-01 96.7% 78.6%
143450 10.2.1.37 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C 0.65 53.0 5.54e-01 100.0% 95.7%
5001041 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 39.0 4.77e-01 92.8% 96.4%
4835076 10.2.1.44 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.63 52.0 5.12e-01 86.7% 94.8%
3891423 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 41.0 4.79e-01 95.6% 91.5%
4882276 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.63 54.0 5.37e-01 92.2% 90.0%
3389074 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 36.0 3.88e-01 90.0% 64.5%
3452090 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.63 38.0 4.68e-01 97.8% 100.0%
3622100 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.62 31.0 3.52e-01 91.1% 59.0%
3786014 10.32.1.237 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.62 46.0 5.16e-01 95.6% 98.6%
3661896 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 42.0 4.56e-01 98.3% 82.8%
3770154 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.62 32.0 3.55e-01 90.6% 60.0%
3490217 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.62 33.0 3.52e-01 91.1% 55.6%
3605363 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 32.0 3.53e-01 90.6% 61.1%
3736041 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 38.0 3.76e-01 91.1% 57.4%
3898208 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 48.0 5.11e-01 97.2% 95.5%
3622983 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 39.0 4.48e-01 96.7% 89.2%
3945527 10.32.1.239 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.60 44.0 4.95e-01 97.8% 100.0%
3240764 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.60 43.0 4.90e-01 97.2% 99.3%
362706 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.60 41.0 4.46e-01 97.2% 84.9%
5064146 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 40.0 4.18e-01 95.6% 77.0%
3208592 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 34.0 3.60e-01 91.1% 65.0%
3444541 11.2.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.56 32.0 3.18e-01 92.8% 49.5%
3474287 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 38.0 4.28e-01 96.1% 90.0%
5040537 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 4.05e-01 90.6% 96.4%
5009883 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 4.38e-01 97.2% 89.4%
3914225 10.32.1.283 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide 0.54 39.0 4.35e-01 90.0% 97.0%
3853746 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.54 43.0 4.60e-01 98.9% 98.1%
3898740 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.54 40.0 4.43e-01 98.9% 98.6%
3921479 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.54 43.0 4.08e-01 100.0% 70.0%
3889087 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 34.0 3.41e-01 91.1% 60.5%
3535172 11.1.1.664 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_D2 0.52 30.0 3.62e-01 96.1% 88.2%
3266593 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.52 36.0 3.73e-01 71.1% 94.7%
4501238 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.52 37.0 3.35e-01 97.2% 53.1%
3611967 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 4.25e-01 96.7% 100.0%
4025348 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 4.32e-01 95.0% 98.1%
3940139 10.1.1.83 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.50 45.0 4.20e-01 96.7% 99.5%