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putative_capsid_protein

Euk-Vir

Sheep_faeces_associated_smacovirus_1

putative_capsid_protein__YP_009252309__Sheep_faeces_associated_smacovirus_1__1843756

Identity

Accession:
YP_009252309 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

64.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-168_280-313
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF23784.2 best Smaco_capsid 136.7 1.30e-39 83.3% 46.4%
PF23784.2 Smaco_capsid 30.9 2.00e-07 18.7% 9.5%
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 36.0 4.47e-01 97.5% 71.8%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 32.0 3.25e-01 95.5% 40.5%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 32.0 4.17e-01 96.0% 68.6%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 34.0 3.65e-01 97.5% 49.4%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 34.0 3.57e-01 97.0% 47.0%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.72 60.0 6.44e-01 99.0% 99.4%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 34.0 3.73e-01 96.0% 53.8%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 34.0 3.77e-01 94.9% 55.3%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 32.0 4.29e-01 97.0% 78.0%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 35.0 3.70e-01 96.5% 51.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 32.0 3.58e-01 96.0% 53.5%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.67 37.0 4.63e-01 94.4% 88.0%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.67 35.0 4.78e-01 95.5% 100.0%
7u6iA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.67 41.0 3.83e-01 98.0% 49.6%
2wnoA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.67 37.0 4.82e-01 94.9% 94.7%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 5.23e-01 100.0% 83.6%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.67 38.0 3.73e-01 98.0% 49.5%
5c5uB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.67 39.0 3.98e-01 97.5% 58.9%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 50.0 5.51e-01 100.0% 96.3%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 52.0 5.44e-01 100.0% 89.1%
4xabA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.65 44.0 4.05e-01 98.0% 54.3%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.65 29.0 2.90e-01 99.0% 38.0%
2xdvA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.64 36.0 3.61e-01 99.0% 52.8%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 4.99e-01 99.5% 81.5%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.64 38.0 4.70e-01 98.5% 95.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 32.0 4.38e-01 97.5% 96.8%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 51.0 4.46e-01 100.0% 57.3%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.64 35.0 4.34e-01 96.5% 87.2%
5ep9D00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 39.0 3.68e-01 98.5% 49.6%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 31.0 4.11e-01 97.5% 86.3%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.63 43.0 4.84e-01 97.5% 89.9%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 51.0 5.42e-01 100.0% 94.4%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 39.0 3.76e-01 98.0% 53.4%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.63 36.0 4.68e-01 95.5% 99.1%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 5.32e-01 99.5% 96.4%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.62 45.0 4.62e-01 99.5% 77.4%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 5.05e-01 100.0% 82.2%
1h2kA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 39.0 3.45e-01 98.0% 43.6%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 5.13e-01 100.0% 83.9%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 5.16e-01 98.5% 92.0%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 4.62e-01 100.0% 73.5%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 31.0 4.17e-01 99.5% 98.0%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 4.54e-01 98.5% 96.9%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 34.0 3.35e-01 96.5% 51.8%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.58 23.0 3.11e-01 98.0% 66.0%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.61e-01 100.0% 68.8%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 4.57e-01 98.0% 98.5%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 4.66e-01 96.0% 100.0%
4xcbD00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 42.0 3.87e-01 98.0% 58.2%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 54.0 4.73e-01 100.0% 75.1%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 54.0 4.56e-01 100.0% 75.7%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.57 39.0 4.57e-01 97.0% 100.0%
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.56 38.0 4.49e-01 97.0% 100.0%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 52.0 4.51e-01 100.0% 90.9%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 4.98e-01 98.0% 91.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.45e-01 100.0% 69.6%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.62e-01 100.0% 78.5%
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.41e-01 98.5% 57.5%
7vbqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 40.0 3.71e-01 100.0% 62.6%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 4.14e-01 96.5% 90.3%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 4.24e-01 96.0% 96.9%
1i1gA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.50 21.0 3.10e-01 81.8% 92.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064648 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.74 38.0 5.32e-01 97.5% 100.0%
3236803 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.73 40.0 5.38e-01 97.0% 100.0%
4941447 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 41.0 5.40e-01 95.5% 100.0%
4934399 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 38.0 4.83e-01 96.0% 86.7%
5045891 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 40.0 5.08e-01 96.0% 92.5%
5063656 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 41.0 5.31e-01 98.5% 100.0%
5005781 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 35.0 4.69e-01 97.0% 90.5%
4648192 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 35.0 4.51e-01 97.0% 82.6%
2710690 10.2.1.29 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.69 61.0 6.12e-01 100.0% 91.0%
3636412 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.68 39.0 3.60e-01 97.5% 44.0%
3933402 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.68 39.0 5.00e-01 99.0% 96.5%
3389637 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.68 39.0 5.05e-01 99.0% 100.0%
4969101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 37.0 4.96e-01 98.5% 100.0%
5053773 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 41.0 5.09e-01 96.0% 97.5%
5046630 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 39.0 5.06e-01 98.5% 99.1%
4038352 10.32.1.273 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29775 0.67 38.0 4.82e-01 97.5% 94.8%
1693524 10.2.1.49 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN 0.66 51.0 5.35e-01 100.0% 86.7%
5020593 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 38.0 4.14e-01 100.0% 66.7%
3526370 10.32.1.72 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.66 39.0 4.90e-01 96.5% 95.8%
5039047 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 39.0 5.00e-01 97.0% 100.0%
4980801 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 36.0 4.83e-01 96.5% 100.0%
1674132 10.12.1.25 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.65 44.0 4.05e-01 98.0% 54.3%
3979069 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 40.0 4.99e-01 97.0% 100.0%
3742116 10.32.1.72 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.65 38.0 4.83e-01 96.0% 98.3%
4966023 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.65 41.0 5.04e-01 97.0% 100.0%
4958335 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 37.0 4.06e-01 100.0% 66.7%
2448383 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.64 31.0 3.81e-01 99.0% 71.3%
1158440 10.2.1.59 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV_turret_3rd 0.64 39.0 4.82e-01 98.0% 96.7%
5040908 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.64 39.0 4.71e-01 97.0% 91.5%
1878989 10.2.1.29 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.64 60.0 5.91e-01 100.0% 94.2%
3614575 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 43.0 5.00e-01 98.0% 93.8%
328688 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.62 51.0 5.05e-01 100.0% 82.2%
3869890 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 42.0 4.67e-01 97.0% 87.1%
3238880 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 38.0 4.61e-01 93.9% 93.1%
3607565 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 43.0 4.79e-01 97.5% 92.3%
222219 10.2.1.40 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TNV_CP 0.60 50.0 5.16e-01 98.5% 92.0%
4407112 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 33.0 4.35e-01 96.0% 100.0%
4944751 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 36.0 4.54e-01 98.0% 100.0%
5041022 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 39.0 4.64e-01 93.9% 100.0%
3599477 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 42.0 4.72e-01 93.9% 95.3%
3614853 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 37.0 4.47e-01 94.9% 93.3%
3786014 10.32.1.237 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.58 40.0 4.63e-01 94.9% 97.9%
4631095 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 40.0 4.56e-01 97.5% 92.7%
1713715 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.58 50.0 4.42e-01 100.0% 64.2%
3285854 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.57 34.0 4.08e-01 99.5% 87.6%
2099165 10.2.1.22 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.57 54.0 4.37e-01 100.0% 67.3%
3705883 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 4.55e-01 94.9% 90.6%
1114663 10.2.1.22 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.56 53.0 4.41e-01 100.0% 73.3%
3249790 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.56 33.0 3.18e-01 100.0% 50.0%
3480988 10.2.1.18 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.56 39.0 4.50e-01 96.5% 100.0%
2526957 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 49.0 4.33e-01 100.0% 66.0%
2880697 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.55 51.0 4.40e-01 100.0% 66.0%
1043486 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 51.0 4.46e-01 100.0% 68.1%
3891946 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.54 38.0 3.97e-01 99.5% 77.8%
3698179 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 39.0 4.28e-01 98.5% 92.5%
3769357 10.1.1.69 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CAND6-7_N 0.53 44.0 4.71e-01 94.4% 100.0%
3243464 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 37.0 4.30e-01 98.5% 100.0%
5009585 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 4.16e-01 98.0% 89.6%
3719077 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 46.0 4.53e-01 96.5% 99.5%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.50 37.0 4.11e-01 96.5% 99.3%