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putative_capsid_protein

Euk-Vir

Bovine_faeces_associated_smacovirus_1

putative_capsid_protein__YP_009252315__Bovine_faeces_associated_smacovirus_1__1843749

Identity

Accession:
YP_009252315 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

70.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-163_232-268
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF23784.2 best Smaco_capsid 167.5 5.80e-49 82.3% 46.4%
PF23784.2 Smaco_capsid 28.4 1.20e-06 19.7% 10.1%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.73 60.0 6.48e-01 99.0% 98.2%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 57.0 5.79e-01 100.0% 88.2%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 51.0 5.23e-01 100.0% 79.9%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 55.0 5.08e-01 100.0% 68.0%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 52.0 5.69e-01 100.0% 96.4%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 54.0 5.13e-01 100.0% 72.3%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 5.54e-01 100.0% 95.1%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 53.0 5.46e-01 100.0% 88.0%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.66 38.0 4.88e-01 96.0% 98.2%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.66 39.0 4.81e-01 98.5% 95.0%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 52.0 5.47e-01 100.0% 91.6%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.64 36.0 4.64e-01 96.0% 97.3%
4xabA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.64 44.0 4.06e-01 99.0% 55.5%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 54.0 4.88e-01 100.0% 67.7%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 37.0 4.64e-01 98.0% 93.5%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 5.03e-01 100.0% 78.4%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 5.17e-01 100.0% 83.0%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 5.10e-01 100.0% 81.4%
3emrA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.61 41.0 3.64e-01 99.0% 47.8%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 56.0 5.13e-01 100.0% 80.4%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 29.0 4.04e-01 97.5% 94.7%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 56.0 5.08e-01 100.0% 78.1%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 5.11e-01 100.0% 83.8%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 37.0 4.58e-01 98.0% 98.4%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 37.0 4.37e-01 98.0% 87.8%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 5.03e-01 100.0% 83.5%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 4.96e-01 100.0% 95.7%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.67e-01 100.0% 68.4%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 38.0 4.57e-01 98.0% 96.2%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 40.0 4.74e-01 97.0% 100.0%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.59 39.0 4.63e-01 99.0% 98.5%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 56.0 4.71e-01 100.0% 76.2%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 35.0 3.37e-01 97.0% 51.8%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 30.0 4.04e-01 99.5% 96.9%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 55.0 4.68e-01 100.0% 75.1%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 4.85e-01 100.0% 78.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 37.0 4.20e-01 96.5% 85.6%
2fctB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.57 46.0 3.99e-01 98.5% 55.5%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 53.0 4.62e-01 100.0% 90.2%
5m0tB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 42.0 3.72e-01 100.0% 57.3%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 4.12e-01 98.0% 88.2%
1uhvA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.53 30.0 3.38e-01 98.5% 69.9%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.53 34.0 4.08e-01 91.9% 100.0%
2gj2A00 3.30.70.2070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › VP9 protein domain 0.53 23.0 3.31e-01 82.3% 93.7%
2x12A01 2.60.40.2010 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.60e-01 98.0% 69.5%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 37.0 3.63e-01 98.0% 65.9%
8ehtB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.52 38.0 4.31e-01 95.5% 100.0%
4r4xA02 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.50 44.0 4.55e-01 97.0% 97.9%
5d6eA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 22.0 3.12e-01 87.9% 91.3%
7dfqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 26.0 3.19e-01 96.5% 77.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591145 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.74 42.0 5.54e-01 99.5% 100.0%
4930609 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 43.0 5.02e-01 99.0% 83.6%
5068228 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 39.0 5.22e-01 99.0% 100.0%
5061301 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.70 36.0 3.36e-01 100.0% 40.0%
5039150 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 41.0 5.25e-01 98.5% 100.0%
3314257 10.32.1.193 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.68 48.0 5.06e-01 100.0% 80.0%
4958335 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 38.0 4.19e-01 100.0% 66.1%
140027 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.67 55.0 5.08e-01 100.0% 68.0%
5039047 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 40.0 5.07e-01 98.0% 100.0%
5038393 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 42.0 4.99e-01 99.0% 91.1%
4980801 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 37.0 4.88e-01 97.5% 100.0%
3782815 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 45.0 4.93e-01 97.0% 83.0%
1158440 10.2.1.59 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV_turret_3rd 0.66 39.0 4.77e-01 98.5% 93.4%
4675807 10.34.1.1 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.66 32.0 4.38e-01 94.4% 91.0%
3614575 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 43.0 5.01e-01 98.0% 91.7%
4415823 10.32.1.246 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PalB_C 0.65 41.0 4.92e-01 98.0% 93.3%
1839934 10.12.1.60 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AUDH_Cupin 0.65 41.0 4.26e-01 97.5% 66.3%
3698953 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 42.0 4.96e-01 98.0% 92.9%
3269110 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.64 32.0 4.22e-01 100.0% 85.5%
3605104 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 42.0 4.93e-01 98.0% 92.9%
4937727 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 38.0 4.83e-01 98.5% 100.0%
3392335 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 42.0 4.81e-01 98.0% 88.0%
3275307 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 37.0 4.70e-01 95.5% 98.3%
3270665 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.63 39.0 4.84e-01 98.0% 98.4%
3254899 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.62 41.0 4.67e-01 98.0% 89.0%
3713562 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 40.0 4.64e-01 98.0% 89.7%
3601278 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 40.0 4.56e-01 97.5% 87.6%
3922372 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 41.0 4.68e-01 98.0% 90.0%
3692007 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 41.0 4.74e-01 97.5% 93.1%
3607565 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 43.0 4.85e-01 98.0% 92.9%
5041022 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 40.0 4.79e-01 96.0% 100.0%
3611495 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 40.0 4.64e-01 97.0% 92.9%
3522617 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 40.0 4.54e-01 96.0% 89.3%
3966483 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 34.0 4.33e-01 94.9% 95.7%
3717342 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 46.0 4.62e-01 98.0% 79.5%
3567303 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 43.0 4.77e-01 98.0% 92.5%
3235242 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 42.0 4.56e-01 98.0% 85.9%
2099165 10.2.1.22 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.59 56.0 4.48e-01 100.0% 66.8%
3484435 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.66e-01 97.0% 94.0%
3886059 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.55e-01 98.0% 88.1%
3488907 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 43.0 4.70e-01 98.5% 92.5%
3487843 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 42.0 4.74e-01 98.0% 94.8%
4618603 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 44.0 4.66e-01 98.0% 87.4%
3886325 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 42.0 4.61e-01 97.0% 89.1%
3884463 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 43.0 4.57e-01 98.0% 85.0%
3483008 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.50e-01 97.5% 88.7%
3628503 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.63e-01 98.0% 92.9%
3893737 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.57 43.0 4.60e-01 98.0% 88.2%
3176380 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 4.77e-01 98.5% 90.6%
3598266 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 40.0 4.55e-01 97.0% 94.7%
3844671 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.57 42.0 4.56e-01 98.0% 90.9%
4017308 10.32.1.232 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 0.55 40.0 4.22e-01 99.0% 82.8%
5025925 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 43.0 4.61e-01 97.5% 97.1%
3793143 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 43.0 4.51e-01 97.5% 93.7%
3190719 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 4.42e-01 97.5% 92.0%
3942277 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 38.0 4.32e-01 98.0% 99.3%