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putative_capsid_protein

Euk-Vir

Beihai_weivirus-like_virus_17

putative_capsid_protein__YP_009336945__Beihai_weivirus-like_virus_17__1922745

Identity

Accession:
YP_009336945 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

79.8 mean pLDDT

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-308
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337275__Changjiang_tombus-like_virus_14__1922807__D50-279
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 71.0 6.69e-01 98.9% 98.1%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 70.0 6.57e-01 98.9% 98.7%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 67.0 6.60e-01 98.9% 96.1%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 23.0 3.62e-01 72.8% 69.3%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 44.0 5.24e-01 78.9% 89.6%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.70 32.0 4.87e-01 77.0% 100.0%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 61.0 5.89e-01 91.3% 99.7%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 44.0 5.46e-01 77.4% 100.0%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.70 28.0 4.56e-01 72.5% 100.0%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 44.0 4.27e-01 77.4% 58.7%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 25.0 3.66e-01 80.0% 71.3%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 45.0 5.39e-01 87.5% 98.3%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 43.0 5.04e-01 77.4% 91.3%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 41.0 5.10e-01 75.5% 96.4%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.65 28.0 4.14e-01 84.5% 88.9%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 4.98e-01 77.7% 86.3%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 44.0 4.76e-01 87.5% 80.2%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.65 42.0 5.16e-01 75.5% 100.0%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 5.03e-01 84.9% 86.4%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 25.0 4.03e-01 85.3% 92.2%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.64 45.0 5.29e-01 77.7% 98.4%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 45.0 4.94e-01 77.4% 86.2%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 44.0 5.17e-01 77.4% 97.4%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.63 26.0 3.88e-01 80.0% 86.6%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 27.0 3.36e-01 72.8% 61.4%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 42.0 4.30e-01 76.6% 68.2%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 5.06e-01 75.8% 100.0%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 42.0 4.93e-01 75.5% 96.7%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 38.0 4.71e-01 87.5% 98.2%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 4.81e-01 78.1% 95.7%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 24.0 2.89e-01 74.3% 51.1%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.60 30.0 4.30e-01 78.1% 99.2%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 24.0 3.85e-01 76.2% 98.9%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 4.38e-01 76.6% 76.8%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 4.54e-01 87.5% 76.8%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 24.0 3.86e-01 74.3% 100.0%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 4.31e-01 81.5% 72.0%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 31.0 4.17e-01 76.2% 100.0%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 32.0 4.23e-01 80.0% 100.0%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 4.43e-01 88.3% 81.3%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 26.0 3.69e-01 96.6% 87.3%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.70e-01 87.5% 81.8%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.56 29.0 4.00e-01 81.1% 100.0%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 23.0 3.40e-01 84.5% 84.1%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.92e-01 87.9% 70.6%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.54 26.0 3.64e-01 76.2% 95.0%
3eqeA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 29.0 3.63e-01 85.3% 85.3%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 31.0 4.01e-01 90.2% 100.0%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.51 30.0 3.85e-01 74.7% 98.7%
5fuiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 25.0 3.59e-01 96.2% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3022795 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.76 72.0 5.83e-01 98.9% 84.2%
4883090 10.2.1.20 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Birna_VP2 0.74 70.0 5.85e-01 98.9% 95.5%
1114663 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.74 70.0 6.42e-01 98.9% 91.8%
2099165 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.73 69.0 6.20e-01 98.9% 86.8%
5026683 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.72 24.0 3.66e-01 74.0% 67.5%
5064648 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 29.0 4.70e-01 74.0% 100.0%
5047474 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 28.0 4.63e-01 83.8% 100.0%
4958880 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 27.0 4.62e-01 85.7% 100.0%
3437261 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.69 32.0 4.82e-01 73.6% 100.0%
5053826 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 31.0 4.72e-01 75.5% 100.0%
3833238 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.69 32.0 4.76e-01 72.5% 100.0%
5058760 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 29.0 4.49e-01 72.5% 93.9%
5074352 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 29.0 4.60e-01 84.5% 100.0%
1876188 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 25.0 3.66e-01 80.0% 71.3%
5048055 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 29.0 4.51e-01 90.9% 97.3%
4623622 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.67 26.0 4.38e-01 74.7% 100.0%
5063656 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 31.0 4.64e-01 90.6% 100.0%
5047633 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.67 29.0 4.48e-01 85.3% 100.0%
3236803 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 28.0 4.48e-01 73.6% 100.0%
5073784 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 30.0 4.54e-01 73.2% 100.0%
3591145 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 29.0 4.53e-01 78.5% 100.0%
4969217 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 28.0 4.43e-01 90.6% 100.0%
1233 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.65 45.0 5.28e-01 87.2% 97.9%
5068228 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 28.0 4.36e-01 85.7% 100.0%
4951620 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 30.0 4.45e-01 80.0% 100.0%
5038687 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 27.0 4.23e-01 73.2% 100.0%
5046630 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 30.0 4.46e-01 88.7% 100.0%
3406853 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 31.0 4.47e-01 85.7% 100.0%
4941297 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 27.0 4.22e-01 74.0% 100.0%
3214241 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.64 24.0 3.94e-01 71.7% 90.5%
5083101 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 31.0 4.44e-01 84.5% 100.0%
5060962 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 27.0 4.20e-01 75.5% 100.0%
5045833 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 28.0 4.17e-01 78.9% 100.0%
5033161 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 32.0 4.49e-01 73.6% 100.0%
3719737 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 30.0 4.21e-01 81.9% 93.1%
2710690 10.2.1.29 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.62 46.0 5.22e-01 86.4% 99.0%
3415539 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.61 26.0 4.00e-01 73.2% 94.5%
1165730 10.20.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N_2 0.61 22.0 3.49e-01 75.8% 82.2%
222219 10.2.1.40 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TNV_CP 0.61 41.0 4.81e-01 78.1% 95.7%
4980801 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 26.0 4.07e-01 73.2% 100.0%
3222026 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.60 26.0 3.79e-01 79.2% 88.7%
3614575 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 32.0 4.27e-01 74.7% 93.8%
1878989 10.2.1.29 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.60 45.0 5.02e-01 78.1% 97.1%
4960627 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 28.0 4.07e-01 79.2% 98.3%
5039365 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 29.0 4.01e-01 75.1% 89.6%
3214145 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.60 26.0 3.87e-01 81.5% 93.6%
5083851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 28.0 4.07e-01 79.6% 100.0%
5039644 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 28.0 4.08e-01 78.9% 100.0%
3233159 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.59 25.0 3.78e-01 79.6% 92.7%
3780635 10.32.1.184 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II 0.59 28.0 3.74e-01 79.6% 81.4%
3219782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 28.0 3.86e-01 85.3% 88.9%
3607565 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.57 32.0 4.10e-01 84.9% 91.6%
5051219 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.57 30.0 4.10e-01 91.7% 100.0%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 26.0 3.84e-01 80.0% 100.0%
4448434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 28.0 3.83e-01 79.2% 90.7%
5083351 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 31.0 3.97e-01 89.8% 92.7%
5039047 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 26.0 3.85e-01 80.4% 100.0%
5039473 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 26.0 3.83e-01 89.4% 100.0%
5057560 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 28.0 3.67e-01 74.0% 87.6%
3252754 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 28.0 3.83e-01 85.7% 98.5%
3628503 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.53 30.0 3.84e-01 85.7% 93.5%
379700 10.2.1.8 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyhedrin 0.53 38.0 4.20e-01 88.3% 91.1%
3285854 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.53 24.0 3.43e-01 74.3% 88.4%
3994660 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 29.0 3.80e-01 92.8% 96.0%