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putative_capsid_protein
Euk-VirChangjiang_sobemo-like_virus_2
putative_capsid_protein__YP_009337126__Changjiang_sobemo-like_virus_2__1922801
Identity
- Accession:
- YP_009337126 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
76.4
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-221
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00729.25 best | Viral_coat | 27.0 | 5.30e-06 | 94.5% | 67.6% |
D2
high
residues 238-387
Domain cluster:
rep: virus_coat_protein__YP_009407915__Rice_virus_A__2021212__D315-443
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 37.0 | 4.88e-01 | 98.7% | 98.8% |
| 2ztnA02 | 2.40.30.190 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 53.0 | 5.44e-01 | 100.0% | 87.9% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.64 | 38.0 | 4.63e-01 | 99.3% | 92.5% |
| 1sq4A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 35.0 | 3.59e-01 | 100.0% | 54.9% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 35.0 | 4.07e-01 | 91.3% | 78.0% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 32.0 | 4.24e-01 | 96.0% | 100.0% |
| 4rdlA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.60 | 41.0 | 4.73e-01 | 100.0% | 98.1% |
| 1gqgC01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 33.0 | 3.48e-01 | 98.0% | 57.9% |
| 2oa2A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 34.0 | 3.73e-01 | 98.7% | 69.4% |
| 2f0cA02 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.58 | 32.0 | 3.74e-01 | 98.7% | 75.0% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 33.0 | 3.83e-01 | 92.0% | 77.3% |
| 2g19A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.57 | 39.0 | 3.45e-01 | 100.0% | 47.7% |
| 1sppB00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.57 | 36.0 | 4.07e-01 | 99.3% | 84.8% |
| 3itqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.56 | 38.0 | 3.58e-01 | 98.7% | 55.7% |
| 3cnrB00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 34.0 | 4.12e-01 | 92.0% | 95.7% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.55 | 29.0 | 3.40e-01 | 98.7% | 70.5% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 41.0 | 4.52e-01 | 100.0% | 98.3% |
| 1rgxA02 | 2.60.40.4230 | Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain | 0.55 | 25.0 | 3.40e-01 | 97.3% | 90.6% |
| 1yllA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 30.0 | 3.58e-01 | 99.3% | 81.5% |
| 5c5uB00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.55 | 38.0 | 3.57e-01 | 100.0% | 56.8% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 31.0 | 3.42e-01 | 100.0% | 71.9% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 27.0 | 2.76e-01 | 99.3% | 48.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984135 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.67 | 37.0 | 4.72e-01 | 98.0% | 94.0% |
| 4267752 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 40.0 | 4.90e-01 | 98.7% | 92.6% |
| 5025895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 45.0 | 5.32e-01 | 98.7% | 99.0% |
| 3930882 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 38.0 | 4.65e-01 | 98.7% | 91.6% |
| 1877513 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 48.0 | 5.18e-01 | 90.0% | 92.8% |
| 3944005 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.62 | 37.0 | 3.95e-01 | 99.3% | 65.4% |
| 1180014 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.62 | 35.0 | 3.88e-01 | 99.3% | 70.2% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.61 | 40.0 | 4.27e-01 | 100.0% | 73.3% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.60 | 39.0 | 4.53e-01 | 98.0% | 92.4% |
| 5065035 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 31.0 | 4.23e-01 | 86.0% | 98.7% |
| 3802051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 34.0 | 4.14e-01 | 98.0% | 88.4% |
| 961561 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.57 | 32.0 | 3.77e-01 | 99.3% | 77.7% |
| 153856 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 41.0 | 4.51e-01 | 100.0% | 96.7% |
| 5081216 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.54 | 37.0 | 4.25e-01 | 98.7% | 100.0% |
| 4008248 | 1.1.7.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 | 0.53 | 40.0 | 4.27e-01 | 100.0% | 91.5% |
| 3710460 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.52 | 36.0 | 4.12e-01 | 99.3% | 95.4% |
| 1693519 | 1.2.1.0 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain | 0.51 | 47.0 | 4.54e-01 | 100.0% | 90.0% |
| 4014463 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 43.0 | 4.33e-01 | 98.0% | 89.3% |
| 3705019 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 42.0 | 4.42e-01 | 98.0% | 99.3% |