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putative_capsid_protein
Euk-VirWenzhou_shrimp_virus_9
putative_capsid_protein__YP_009337863__Wenzhou_shrimp_virus_9__1923656
Identity
- Accession:
- YP_009337863 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
58.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 68-225
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11729.15 best | Capsid-VNN | 75.2 | 7.40e-21 | 97.5% | 41.8% |
D2
high
residues 234-337
Domain cluster:
rep: putative_capsid_protein__YP_009182197__Daeseongdong_virus_2_Viruses.__X__D249-351
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.57 | 45.0 | 4.88e-01 | 100.0% | 97.8% |
| 2m5sA00 | 2.40.30.240 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 49.0 | 4.61e-01 | 100.0% | 95.2% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 40.0 | 4.02e-01 | 99.0% | 83.5% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.50 | 43.0 | 3.93e-01 | 97.1% | 91.0% |
| 4rlzA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.50 | 45.0 | 4.45e-01 | 100.0% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1693525 | 1.2.1.3 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Capsid-VNN | 0.79 | 73.0 | 6.87e-01 | 100.0% | 93.5% |
| 1696280 | 1.2.1.0 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain | 0.71 | 64.0 | 5.42e-01 | 100.0% | 84.0% |
| 3795553 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.61 | 37.0 | 3.92e-01 | 90.4% | 67.7% |
| 4849089 | 2485.3.1.8 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein | 0.57 | 51.0 | 4.92e-01 | 98.1% | 99.1% |
| 3388311 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.56 | 44.0 | 4.81e-01 | 100.0% | 100.0% |
| 3192572 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 28.0 | 3.51e-01 | 70.2% | 85.0% |
| 4998126 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.53 | 30.0 | 3.28e-01 | 100.0% | 67.1% |
| 3290668 | 3370.1.1.0 ↗ | beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 | 0.52 | 37.0 | 4.06e-01 | 99.0% | 100.0% |
| 3501352 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.51 | 35.0 | 4.03e-01 | 86.5% | 98.7% |
D3
medium
residues 460-517