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putative_capsid_protein

Euk-Vir

Wuhan_Millipede_virus_4

putative_capsid_protein__YP_009342319__Wuhan_Millipede_virus_4__1923689

Identity

Accession:: YP_009342319 ↗
Protein ID:: putative_capsid_protein
Kingdom:: euk

Quality

85.4 mean pLDDT

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 331-441

PDB

Domain cluster: rep: putative_capsid_protein__YP_009345135__Wuhan_cricket_virus_2__1923697__D333-443

D2 medium residues 90-195_299-321

PDB

Domain cluster: rep: coat_protein__YP_009508045__Carrot_cryptic_virus__589918__D88-201_328-358

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.61	32.0	3.98e-01	86.8%	84.0%
3s6jE02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.58	27.0	3.57e-01	89.9%	81.2%
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.56	30.0	3.64e-01	76.0%	77.6%
3mhsB00	1.10.246.140	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1	0.56	28.0	3.26e-01	79.8%	67.0%
2xvtC00	1.10.150.510	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family	0.55	27.0	3.44e-01	82.2%	77.2%
1p65A00	6.10.140.90	Special › Helix non-globular › Helix Hairpins ›	0.54	24.0	3.44e-01	79.1%	91.2%
1c0wA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	26.0	3.33e-01	76.0%	80.8%
4etsA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	34.0	3.97e-01	96.1%	96.6%
5c4yA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	34.0	3.42e-01	92.2%	64.7%
1n2aA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	32.0	3.46e-01	85.3%	76.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3691565	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.66	27.0	3.69e-01	78.3%	73.8%
3914846	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.59	32.0	3.14e-01	75.2%	47.1%
5063374	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.58	38.0	3.80e-01	95.3%	63.7%
4984189	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.56	38.0	3.66e-01	96.9%	61.4%
3628598	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.55	30.0	3.66e-01	75.2%	85.0%
3587501	162.1.1.1 ↗	alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD	0.54	40.0	4.22e-01	90.7%	87.0%
3462691	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	28.0	3.70e-01	94.6%	100.0%
3421392	109.4.1.450 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247	0.52	43.0	3.37e-01	90.7%	61.5%

D3 medium residues 196-298

PDB

Domain cluster: rep: putative_capsid_protein__YP_009345135__Wuhan_cricket_virus_2__1923697__D200-298