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putative_capsid_protein
Euk-VirChimpanzee_associated_porprismacovirus_2
putative_capsid_protein__YP_009508861__Chimpanzee_associated_porprismacovirus_2__2170110
Identity
- Accession:
- YP_009508861 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
55.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cremevirales›
Smacoviridae›
Porprismacovirus›
Chimpanzee_associated_porprismacovirus_2
TaxID: 2170110
Cluster
View cluster (49 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-30_50-80_189-203_305-321_379-394
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.63 | 43.0 | 4.77e-01 | 98.9% | 92.6% |
| 2ztnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 55.0 | 4.34e-01 | 98.9% | 95.8% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 54.0 | 4.38e-01 | 98.9% | 95.5% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 54.0 | 4.46e-01 | 98.9% | 98.2% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 53.0 | 3.85e-01 | 98.9% | 76.9% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 54.0 | 4.04e-01 | 98.9% | 86.9% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 38.0 | 3.89e-01 | 100.0% | 65.2% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 3.79e-01 | 100.0% | 69.1% |
| 3jb8A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 4.19e-01 | 98.9% | 94.6% |
| 2izwC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 53.0 | 4.08e-01 | 100.0% | 82.7% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 53.0 | 4.01e-01 | 100.0% | 89.0% |
| 1wcdJ01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 3.72e-01 | 98.9% | 71.5% |
| 1c8nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 50.0 | 3.83e-01 | 97.8% | 84.5% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 51.0 | 3.89e-01 | 100.0% | 83.9% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 50.0 | 3.65e-01 | 100.0% | 68.3% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.57 | 38.0 | 3.84e-01 | 100.0% | 66.7% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 51.0 | 3.78e-01 | 98.9% | 77.4% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 37.0 | 3.75e-01 | 100.0% | 66.3% |
| 3cjiA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 3.61e-01 | 100.0% | 84.5% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.55 | 50.0 | 4.02e-01 | 98.9% | 99.4% |
| 5mqcC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 3.57e-01 | 100.0% | 86.9% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.55 | 44.0 | 4.44e-01 | 97.8% | 84.0% |
| 7dodB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 46.0 | 3.71e-01 | 97.8% | 86.5% |
| 5e6sB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.54 | 39.0 | 3.32e-01 | 100.0% | 46.6% |
| 2gh8A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.68e-01 | 100.0% | 79.7% |
| 2id4A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 47.0 | 4.10e-01 | 97.8% | 97.1% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 47.0 | 3.94e-01 | 100.0% | 73.1% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 35.0 | 3.45e-01 | 100.0% | 64.6% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.44e-01 | 100.0% | 61.6% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 45.0 | 3.63e-01 | 100.0% | 51.9% |
| 7wdtA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.68e-01 | 95.6% | 100.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2539045 | 10.2.1.12 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Luteo_coat | 0.63 | 57.0 | 4.84e-01 | 100.0% | 99.3% |
| 1724852 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.61 | 54.0 | 4.45e-01 | 98.9% | 97.6% |
| 328688 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.59 | 53.0 | 4.08e-01 | 100.0% | 82.7% |
| 1043486 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.59 | 51.0 | 3.69e-01 | 100.0% | 68.8% |
| 1232 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.57 | 50.0 | 3.95e-01 | 98.9% | 94.9% |
| 5082829 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 40.0 | 4.34e-01 | 97.8% | 89.3% |
| 2793614 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.57 | 48.0 | 3.74e-01 | 96.7% | 78.5% |
| 3937438 | 11.1.5.84 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ERMP1_C | 0.55 | 40.0 | 3.43e-01 | 100.0% | 48.6% |
| 5028923 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.53 | 45.0 | 3.38e-01 | 100.0% | 38.2% |
| 5055778 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 42.0 | 4.06e-01 | 100.0% | 75.2% |
| 3542882 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 3.74e-01 | 100.0% | 53.8% |
| 4872939 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.52 | 44.0 | 3.51e-01 | 98.9% | 82.3% |
| 3489254 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 45.0 | 3.61e-01 | 97.8% | 50.3% |
| 3481131 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 46.0 | 3.97e-01 | 98.9% | 100.0% |
| 4471982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.51 | 46.0 | 3.43e-01 | 100.0% | 43.9% |
| 4940745 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 46.0 | 4.11e-01 | 100.0% | 91.5% |
| 3581433 | 10.2.1.39 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C | 0.51 | 45.0 | 3.55e-01 | 100.0% | 67.7% |
| 2141919 | 11.1.5.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial | 0.50 | 43.0 | 3.71e-01 | 94.5% | 100.0% |
D2
medium
residues 31-49_100-128_161-188_357-378
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mqcB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 54.0 | 4.12e-01 | 100.0% | 61.9% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 37.0 | 3.45e-01 | 100.0% | 56.6% |
| 2bsyA02 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.52 | 34.0 | 3.40e-01 | 100.0% | 63.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725190 | 10.32.1.237 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 | 0.57 | 52.0 | 4.76e-01 | 100.0% | 84.6% |
| 3487210 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 51.0 | 4.73e-01 | 100.0% | 87.2% |
| 4024071 | 10.32.1.17 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase | 0.54 | 48.0 | 3.91e-01 | 100.0% | 85.8% |