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putative_capsid_protein
Euk-VirOdonata-associated_circular_virus-3_Viruses.
putative_capsid_protein__YP_009552098__Odonata-associated_circular_virus-3_Viruses.__X
Identity
- Accession:
- YP_009552098 ↗
- Protein ID:
- putative_capsid_protein
- Kingdom:
- euk
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-128
Domain cluster:
rep: capsid_protein__YP_009259553__Gemycircularvirus_HV-GcV2__1862825__D98-115_143-248
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2sH01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 66.0 | 5.45e-01 | 100.0% | 58.1% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 45.0 | 4.39e-01 | 100.0% | 58.4% |
| 2ii7H00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.70 | 39.0 | 4.22e-01 | 100.0% | 65.1% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 42.0 | 3.85e-01 | 100.0% | 47.6% |
| 2jdaB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 39.0 | 3.74e-01 | 100.0% | 51.4% |
| 3f65G01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 41.0 | 4.46e-01 | 98.4% | 74.3% |
| 1o91A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 37.0 | 3.71e-01 | 100.0% | 55.0% |
| 6mnjA01 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 49.0 | 4.60e-01 | 100.0% | 67.1% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 46.0 | 3.72e-01 | 100.0% | 40.5% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 4.47e-01 | 100.0% | 78.9% |
| 3napA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 45.0 | 3.51e-01 | 100.0% | 36.7% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 48.0 | 4.27e-01 | 100.0% | 59.7% |
| 7dodB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 42.0 | 3.72e-01 | 100.0% | 47.7% |
| 2dpkA01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.58 | 39.0 | 4.08e-01 | 100.0% | 73.3% |
| 3webA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 40.0 | 3.98e-01 | 100.0% | 67.4% |
| 3wnoA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 35.0 | 3.47e-01 | 100.0% | 56.9% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 36.0 | 3.46e-01 | 100.0% | 53.7% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 41.0 | 4.44e-01 | 96.9% | 88.9% |
| 4geiA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.52e-01 | 100.0% | 79.9% |
| 6aj3B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 4.42e-01 | 100.0% | 72.9% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.55e-01 | 100.0% | 43.5% |
| 2b39A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.81e-01 | 99.2% | 72.0% |
| 1ju3A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 46.0 | 3.84e-01 | 100.0% | 54.1% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 29.0 | 3.25e-01 | 100.0% | 64.6% |
| 2fauA01 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.71e-01 | 100.0% | 64.2% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.84e-01 | 99.2% | 78.5% |
| 2zotC00 | 2.60.40.4060 | Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain | 0.51 | 38.0 | 3.69e-01 | 100.0% | 70.7% |
| 3hlkA01 | 2.60.40.2240 | Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain | 0.50 | 39.0 | 3.86e-01 | 100.0% | 77.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2841541 | 10.2.1.11 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat | 0.72 | 66.0 | 5.42e-01 | 100.0% | 57.3% |
| 5039581 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 41.0 | 4.37e-01 | 100.0% | 69.0% |
| 4374005 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 38.0 | 3.99e-01 | 100.0% | 61.7% |
| 1852013 | 11.1.5.40 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BNR_assoc_N | 0.64 | 50.0 | 4.57e-01 | 100.0% | 62.5% |
| 3242307 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.64 | 42.0 | 4.79e-01 | 100.0% | 89.5% |
| 4941474 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 40.0 | 4.58e-01 | 100.0% | 85.3% |
| 3503921 | 11.1.1.187 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EFF-AFF | 0.61 | 38.0 | 4.09e-01 | 100.0% | 73.3% |
| 3639340 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.59 | 46.0 | 4.28e-01 | 100.0% | 66.3% |
| 3879948 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.58 | 44.0 | 4.39e-01 | 100.0% | 76.3% |
| 4017488 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.58 | 46.0 | 4.34e-01 | 100.0% | 69.7% |
| 4427418 | 11.1.1.1229 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 | 0.58 | 38.0 | 4.30e-01 | 91.3% | 90.5% |
| 3740649 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.57 | 44.0 | 4.28e-01 | 100.0% | 72.4% |
| 3741869 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.56 | 45.0 | 4.23e-01 | 100.0% | 69.4% |
| 3228680 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.55 | 47.0 | 4.22e-01 | 100.0% | 66.9% |
| 4027567 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 50.0 | 4.52e-01 | 100.0% | 81.8% |
| 3246669 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.55 | 44.0 | 4.31e-01 | 100.0% | 78.6% |
| 3639066 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 48.0 | 4.44e-01 | 100.0% | 74.7% |
| 3408738 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 44.0 | 4.36e-01 | 100.0% | 81.5% |
| 5042672 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 41.0 | 3.45e-01 | 100.0% | 46.8% |
| 3182189 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.53 | 48.0 | 4.16e-01 | 100.0% | 78.5% |
| 3785564 | 10.32.1.244 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 | 0.52 | 38.0 | 3.96e-01 | 98.4% | 80.8% |
| 3719717 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 47.0 | 4.32e-01 | 100.0% | 82.4% |
| 3993711 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.78e-01 | 100.0% | 82.9% |
| 3680066 | 10.10.1.5 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 | 0.52 | 38.0 | 3.53e-01 | 100.0% | 61.9% |
| 3251386 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.51 | 42.0 | 3.98e-01 | 100.0% | 74.0% |
| 3608046 | 11.1.1.1317 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C, Rgp1 | 0.51 | 46.0 | 4.31e-01 | 100.0% | 83.7% |
| 2982737 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.50 | 43.0 | 3.39e-01 | 100.0% | 43.2% |
| 3781586 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 45.0 | 4.02e-01 | 100.0% | 68.9% |
| 3235092 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.50 | 43.0 | 3.88e-01 | 100.0% | 68.0% |
| 3625109 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 44.0 | 3.83e-01 | 100.0% | 62.0% |