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putative_capsid_protein

Euk-Vir

Panicum_ecklonii-associated_virus_Viruses.

putative_capsid_protein__YP_009552774__Panicum_ecklonii-associated_virus_Viruses.__X

Identity

Accession:
YP_009552774 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

74.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-277
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.74 35.0 5.10e-01 100.0% 95.5%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.73 32.0 4.81e-01 99.6% 96.9%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.72 52.0 6.00e-01 98.3% 100.0%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 28.0 3.62e-01 97.4% 61.2%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 28.0 4.07e-01 98.3% 77.0%
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.70 66.0 4.90e-01 100.0% 88.0%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.70 66.0 5.03e-01 100.0% 86.9%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.70 66.0 4.95e-01 100.0% 86.4%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 48.0 5.03e-01 100.0% 75.6%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 49.0 5.21e-01 99.6% 81.7%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.69 31.0 4.51e-01 94.4% 92.3%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.69 65.0 4.93e-01 100.0% 87.6%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 50.0 5.04e-01 100.0% 73.6%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 27.0 3.98e-01 97.0% 79.4%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.69 38.0 4.69e-01 99.1% 85.4%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 47.0 5.46e-01 99.6% 97.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 54.0 5.14e-01 100.0% 69.6%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 46.0 5.40e-01 99.1% 96.9%
1a6cA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 4.14e-01 97.4% 47.1%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 47.0 4.86e-01 100.0% 74.3%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 4.88e-01 100.0% 73.5%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 39.0 5.08e-01 96.6% 100.0%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 40.0 4.39e-01 100.0% 71.1%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.67 51.0 5.63e-01 100.0% 95.8%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.67 34.0 4.69e-01 97.4% 95.0%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 5.66e-01 100.0% 100.0%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 5.52e-01 99.6% 95.3%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 48.0 5.06e-01 99.1% 81.7%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 4.35e-01 100.0% 57.7%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 48.0 4.99e-01 98.7% 78.6%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 25.0 3.45e-01 97.0% 65.5%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 5.17e-01 100.0% 89.2%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.65 39.0 4.91e-01 98.7% 97.2%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 4.94e-01 99.6% 79.3%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 5.17e-01 100.0% 96.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.70e-01 100.0% 71.8%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 4.97e-01 99.6% 79.6%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 4.83e-01 100.0% 78.3%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 5.06e-01 100.0% 84.2%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 4.88e-01 100.0% 78.1%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 31.0 3.73e-01 100.0% 68.8%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 33.0 4.49e-01 99.6% 100.0%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 5.05e-01 100.0% 79.2%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 47.0 4.72e-01 100.0% 77.0%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 4.89e-01 100.0% 76.5%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 48.0 4.79e-01 99.6% 76.8%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 4.80e-01 100.0% 79.0%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 4.79e-01 100.0% 78.0%
4kkpA01 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 29.0 3.91e-01 98.7% 84.2%
2woyA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 35.0 3.97e-01 97.4% 73.1%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 36.0 4.56e-01 100.0% 98.6%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 4.49e-01 100.0% 68.5%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 4.66e-01 100.0% 72.6%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.56 32.0 4.16e-01 97.4% 99.2%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 32.0 4.15e-01 95.3% 100.0%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.55 27.0 3.71e-01 95.7% 95.4%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 33.0 3.90e-01 96.1% 86.6%
5euvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 34.0 4.20e-01 96.1% 100.0%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 35.0 4.18e-01 95.7% 100.0%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 4.06e-01 96.1% 98.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3820043 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 39.0 4.81e-01 99.1% 83.3%
4884619 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.70 66.0 4.90e-01 100.0% 86.8%
2990572 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.70 66.0 4.94e-01 100.0% 87.9%
2142463 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.70 66.0 4.92e-01 100.0% 87.6%
2644354 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.70 66.0 4.95e-01 100.0% 88.0%
1195 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.70 66.0 4.95e-01 100.0% 86.4%
2707659 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.69 66.0 4.97e-01 100.0% 84.0%
3306289 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 40.0 4.73e-01 98.3% 80.0%
3889464 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 45.0 5.47e-01 98.3% 100.0%
3473996 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.69 65.0 6.09e-01 100.0% 93.9%
3107798 10.2.1.9 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.69 65.0 4.86e-01 100.0% 87.4%
4440530 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 39.0 4.81e-01 95.7% 87.6%
5041350 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 41.0 4.93e-01 97.4% 87.7%
4877367 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.68 40.0 4.44e-01 100.0% 72.3%
3175730 10.32.1.244 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.67 36.0 4.78e-01 97.4% 93.1%
379700 10.2.1.8 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyhedrin 0.67 46.0 4.81e-01 99.6% 74.6%
3344591 10.2.1.81 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.67 42.0 4.47e-01 98.7% 70.2%
1034414 10.2.1.16 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.67 62.0 5.11e-01 100.0% 82.5%
5067810 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 37.0 4.83e-01 97.4% 96.2%
328688 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.67 48.0 5.06e-01 99.1% 81.7%
2710690 10.2.1.29 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.66 51.0 5.50e-01 100.0% 92.0%
3845113 10.32.1.182 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GP180_GOLD 0.66 39.0 4.83e-01 96.1% 92.4%
178766 10.2.1.53 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid 0.66 62.0 5.66e-01 100.0% 84.6%
4026940 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 37.0 4.31e-01 98.7% 75.8%
1878989 10.2.1.29 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.66 53.0 5.63e-01 100.0% 94.7%
2721878 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 52.0 5.07e-01 100.0% 75.6%
1933849 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.65 48.0 4.96e-01 100.0% 78.5%
139106 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.65 49.0 5.03e-01 99.6% 79.6%
3805853 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.63 32.0 3.46e-01 97.4% 55.4%
31099 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.63 48.0 4.83e-01 100.0% 78.3%
3106452 10.2.1.28 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.63 59.0 4.82e-01 100.0% 88.4%
5083661 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 31.0 4.41e-01 97.9% 99.1%
1197 10.2.1.28 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.63 58.0 4.79e-01 100.0% 86.5%
3947769 10.32.1.10 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BcsB 0.62 38.0 4.73e-01 99.6% 100.0%
3826439 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 33.0 3.73e-01 97.0% 66.1%
169772 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.61 48.0 4.80e-01 100.0% 79.0%
1283664 11.1.5.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 0.61 35.0 3.93e-01 96.6% 71.1%
3580980 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 26.0 3.79e-01 96.6% 90.5%
3452453 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 34.0 3.99e-01 99.6% 78.8%
3461676 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.59 37.0 3.96e-01 98.7% 71.0%
3648822 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 21.0 3.15e-01 90.6% 72.0%
3244516 10.12.1.15 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.58 26.0 2.98e-01 96.1% 52.8%
3705883 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 36.0 4.35e-01 96.1% 90.6%
4368632 10.32.1.266 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.58 35.0 4.44e-01 96.1% 100.0%
3397231 10.2.1.18 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.58 39.0 4.59e-01 95.7% 98.8%
3487745 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 36.0 3.85e-01 95.7% 70.5%
3075118 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 49.0 4.72e-01 100.0% 79.8%
3491161 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 35.0 4.21e-01 98.3% 92.0%
3306288 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 37.0 4.51e-01 98.7% 100.0%
5034488 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 33.0 4.29e-01 94.8% 99.3%
3640711 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 4.33e-01 96.6% 94.1%
2099173 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 49.0 4.65e-01 100.0% 81.7%
3934956 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 36.0 4.30e-01 98.3% 99.4%
4937337 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 28.0 3.56e-01 95.3% 85.6%
3231376 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.54 30.0 3.99e-01 100.0% 98.5%
2722728 10.32.1.60 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TcA_TcB_BD 0.53 40.0 4.52e-01 96.6% 100.0%
3780422 10.1.1.88 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GBD_ELAPOR1 0.53 38.0 4.26e-01 97.9% 94.4%
3424134 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.52 32.0 4.00e-01 98.7% 100.0%
3433672 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.51 31.0 3.83e-01 100.0% 95.3%