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putative_capsid_protein

Euk-Vir

Odonata-associated_circular_virus-13_Viruses.

putative_capsid_protein__YP_009553350__Odonata-associated_circular_virus-13_Viruses.__X

Identity

Accession:
YP_009553350 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

78.2 mean pLDDT

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-268
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.74 33.0 4.82e-01 93.8% 91.3%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.70 52.0 5.86e-01 98.2% 98.8%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.69 33.0 4.53e-01 96.0% 88.5%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 54.0 5.13e-01 100.0% 68.0%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 47.0 5.43e-01 100.0% 94.5%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 50.0 5.01e-01 100.0% 72.3%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 48.0 4.90e-01 100.0% 72.5%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 5.50e-01 99.1% 97.0%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 27.0 3.90e-01 97.3% 78.4%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 5.22e-01 100.0% 87.5%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 48.0 5.32e-01 99.6% 91.6%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.67 40.0 4.94e-01 100.0% 92.2%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 52.0 5.69e-01 100.0% 98.9%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.67 37.0 4.58e-01 99.1% 84.0%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 4.84e-01 100.0% 66.0%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 45.0 4.86e-01 99.1% 79.9%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 45.0 4.90e-01 98.7% 82.5%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 4.35e-01 99.1% 56.6%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 4.78e-01 100.0% 72.6%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 50.0 5.54e-01 99.1% 96.7%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 30.0 4.21e-01 98.7% 88.7%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.65 34.0 4.62e-01 97.8% 95.0%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.89e-01 100.0% 78.8%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.43e-01 99.6% 94.2%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 49.0 5.12e-01 100.0% 83.5%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 49.0 5.34e-01 99.6% 94.1%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.65 61.0 4.57e-01 100.0% 85.9%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.01e-01 99.1% 78.8%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.13e-01 100.0% 82.6%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 5.13e-01 100.0% 87.7%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 50.0 5.05e-01 100.0% 81.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 4.66e-01 100.0% 70.5%
3qs2A00 2.60.40.3290 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA 0.63 47.0 5.28e-01 98.7% 98.8%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.63 58.0 4.49e-01 100.0% 86.3%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 4.82e-01 100.0% 76.6%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.63 59.0 4.42e-01 100.0% 87.0%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 4.86e-01 100.0% 78.3%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 4.88e-01 99.1% 78.6%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 4.97e-01 100.0% 84.2%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 42.0 4.84e-01 100.0% 95.7%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 4.91e-01 100.0% 78.5%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.59 37.0 4.53e-01 99.1% 100.0%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 4.41e-01 100.0% 67.1%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 4.47e-01 100.0% 69.1%
3uxfA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 31.0 3.53e-01 100.0% 67.5%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 4.66e-01 100.0% 73.3%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 5.07e-01 98.7% 94.7%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 27.0 3.77e-01 90.7% 97.0%
2hb0B02 2.60.40.2040 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain 0.56 39.0 4.41e-01 98.7% 89.9%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.53 29.0 3.86e-01 87.6% 97.5%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.50e-01 100.0% 82.9%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.51 31.0 3.80e-01 97.8% 92.5%
2woyA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.96e-01 95.1% 91.4%
2y8kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 32.0 3.94e-01 96.5% 100.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306289 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.72 43.0 4.91e-01 97.8% 79.4%
1713715 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.71 55.0 5.09e-01 100.0% 63.9%
3630685 10.32.1.228 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan 0.70 39.0 5.07e-01 98.2% 93.8%
5032679 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 42.0 5.27e-01 97.3% 98.6%
2589532 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.68 52.0 5.56e-01 99.6% 91.8%
1724852 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.68 48.0 5.47e-01 99.1% 96.4%
1693522 10.2.1.49 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN 0.68 48.0 5.21e-01 100.0% 87.0%
3314257 10.32.1.193 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.67 42.0 4.74e-01 100.0% 79.4%
4888111 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.67 48.0 5.20e-01 100.0% 86.2%
2539045 10.2.1.12 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Luteo_coat 0.67 42.0 5.07e-01 99.1% 94.5%
2441244 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.67 51.0 5.22e-01 100.0% 80.9%
2797580 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.67 37.0 4.41e-01 98.7% 77.2%
3404955 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 40.0 4.90e-01 97.8% 91.0%
5041542 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 37.0 4.91e-01 95.1% 100.0%
3344591 10.2.1.81 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.67 43.0 4.48e-01 98.7% 69.3%
3676965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 37.0 4.59e-01 96.9% 85.7%
3586546 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 37.0 4.76e-01 98.2% 93.1%
2884840 10.2.1.50 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.66 52.0 4.70e-01 100.0% 62.1%
328688 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.65 47.0 4.89e-01 100.0% 78.8%
148379 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.65 51.0 4.64e-01 100.0% 61.6%
1409656 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.65 50.0 5.13e-01 100.0% 82.6%
3473996 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.65 60.0 5.60e-01 100.0% 92.5%
3231820 5001.1.1.52 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › SID-1_RNA_chan 0.64 37.0 4.68e-01 97.8% 91.4%
1234 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.64 49.0 5.32e-01 100.0% 94.3%
1878989 10.2.1.29 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.64 52.0 5.46e-01 100.0% 93.7%
4884619 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.64 59.0 4.41e-01 100.0% 86.4%
2142463 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.64 59.0 4.44e-01 100.0% 87.2%
3253382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 29.0 3.88e-01 92.5% 80.0%
3461676 10.32.1.212 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.63 37.0 3.97e-01 99.6% 65.5%
3106452 10.2.1.28 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.62 58.0 4.72e-01 100.0% 87.9%
1034414 10.2.1.16 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.62 58.0 4.72e-01 100.0% 82.0%
3599477 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 40.0 4.80e-01 95.6% 95.3%
3107798 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.62 58.0 4.35e-01 100.0% 86.8%
3832080 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 35.0 2.57e-01 96.0% 20.3%
143450 10.2.1.37 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C 0.61 42.0 4.84e-01 100.0% 95.7%
4124695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 26.0 3.98e-01 96.5% 96.7%
4020273 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 28.0 3.22e-01 96.9% 55.9%
3976278 10.12.1.18 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 0.59 31.0 3.67e-01 98.2% 71.6%
4368632 10.32.1.266 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.59 37.0 4.57e-01 96.9% 100.0%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.59 49.0 4.59e-01 100.0% 72.2%
3713559 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 38.0 4.48e-01 97.8% 93.5%
3194429 11.1.1.926 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7136 0.58 31.0 3.53e-01 99.1% 64.6%
4982351 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 32.0 4.20e-01 97.3% 100.0%
3190719 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 40.0 4.54e-01 96.5% 92.0%
3075118 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.56 49.0 4.66e-01 100.0% 78.6%
2722728 10.32.1.60 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TcA_TcB_BD 0.55 42.0 4.69e-01 97.3% 100.0%
3472554 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.54 38.0 4.39e-01 98.2% 97.0%
3397231 10.2.1.18 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.54 37.0 4.30e-01 99.6% 96.9%
3784800 10.32.1.240 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PNGaseA 0.54 39.0 4.36e-01 99.1% 94.9%
4335811 11.1.5.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.53 36.0 4.10e-01 95.1% 92.1%
3481763 11.1.1.804 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 0.52 28.0 3.43e-01 96.0% 78.6%
4962168 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 41.0 4.19e-01 100.0% 84.0%
3807224 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.51 29.0 3.43e-01 96.9% 78.1%