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putative_capsid_protein

Euk-Vir

Odonata-associated_circular_virus-16_Viruses.

putative_capsid_protein__YP_009553354__Odonata-associated_circular_virus-16_Viruses.__X

Identity

Accession:
YP_009553354 ↗
Protein ID:
putative_capsid_protein
Kingdom:
euk

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-268
PDB
Domain cluster: rep: putative_capsid_protein__YP_009163923__Gammarus_sp._amphipod_associated_circular_virus__1692250__D49-258
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 58.0 6.33e-01 100.0% 89.4%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.77 61.0 6.27e-01 100.0% 85.1%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 49.0 5.40e-01 100.0% 81.4%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 49.0 4.99e-01 100.0% 71.6%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 52.0 4.95e-01 100.0% 65.5%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 50.0 4.56e-01 100.0% 55.9%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 49.0 5.04e-01 100.0% 74.2%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.68 43.0 5.26e-01 100.0% 98.6%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 53.0 4.98e-01 100.0% 67.7%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 54.0 5.02e-01 100.0% 68.5%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 51.0 4.78e-01 100.0% 65.7%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.65 42.0 5.16e-01 100.0% 100.0%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 5.15e-01 100.0% 93.3%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.16e-01 100.0% 83.0%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.65 39.0 4.87e-01 99.5% 99.2%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.65 39.0 5.01e-01 99.1% 100.0%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 51.0 5.16e-01 100.0% 82.6%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 4.93e-01 100.0% 77.0%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 35.0 4.70e-01 96.8% 100.0%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.63 49.0 5.30e-01 100.0% 93.7%
1pk6C00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 37.0 4.80e-01 100.0% 99.2%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 39.0 4.87e-01 98.6% 100.0%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 40.0 4.91e-01 96.8% 100.0%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.62 27.0 3.56e-01 76.5% 71.9%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 42.0 4.94e-01 99.5% 98.7%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.61 40.0 4.62e-01 100.0% 89.5%
4mbrA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 4.30e-01 98.6% 82.5%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.60 55.0 4.22e-01 100.0% 85.7%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 4.61e-01 95.0% 92.5%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 4.88e-01 100.0% 94.9%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 4.52e-01 100.0% 68.1%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.59 55.0 4.13e-01 100.0% 85.3%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 4.91e-01 100.0% 80.0%
1cd3F00 2.60.169.10 Mainly Beta › Sandwich › Bacteriophage G4 Capsid Proteins Gpf, Gpg, Gpj, subunit 1 › Microviridae F protein 0.58 55.0 4.34e-01 100.0% 95.1%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 39.0 4.62e-01 99.1% 97.4%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 38.0 4.55e-01 99.1% 100.0%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 4.50e-01 99.5% 90.3%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 29.0 4.04e-01 75.6% 100.0%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.78e-01 100.0% 83.3%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 35.0 4.17e-01 98.6% 94.6%
6sl4A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.53 34.0 4.04e-01 97.7% 94.0%
1lnsA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 4.15e-01 99.5% 88.7%
2vovA00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.25e-01 97.3% 85.5%
3iiiA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 4.32e-01 99.5% 97.8%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 31.0 3.84e-01 77.8% 95.0%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.18e-01 100.0% 75.9%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 4.31e-01 98.6% 100.0%
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 33.0 4.01e-01 97.7% 98.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 33.0 3.84e-01 96.4% 92.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3612035 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.79 41.0 5.74e-01 99.5% 100.0%
2841541 10.2.1.11 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat 0.77 62.0 6.24e-01 100.0% 83.9%
3846210 10.32.1.225 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF31127 0.75 46.0 5.56e-01 99.1% 90.7%
3277376 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.74 46.0 5.71e-01 99.5% 97.1%
3788140 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.72 36.0 4.42e-01 96.4% 73.1%
3108819 10.2.1.11 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat 0.72 62.0 6.33e-01 100.0% 93.5%
2862065 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.71 49.0 5.43e-01 100.0% 86.9%
3597812 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 43.0 5.43e-01 99.5% 100.0%
5064146 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 41.0 4.70e-01 96.8% 77.6%
3895304 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.69 43.0 4.54e-01 100.0% 68.7%
3620465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 39.0 4.90e-01 97.3% 89.6%
5039612 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 37.0 4.96e-01 95.5% 98.3%
3537625 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.68 46.0 5.35e-01 97.7% 96.1%
3596607 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 46.0 5.49e-01 99.1% 100.0%
3614575 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 41.0 4.98e-01 98.6% 93.1%
4882276 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 50.0 5.33e-01 93.7% 88.9%
3598492 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 40.0 4.33e-01 99.5% 70.9%
3707025 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 44.0 5.18e-01 100.0% 97.4%
3611465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 39.0 4.87e-01 99.5% 95.0%
3884463 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 45.0 4.91e-01 99.1% 85.6%
3698953 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 38.0 4.67e-01 100.0% 91.4%
3700401 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 39.0 4.29e-01 99.5% 71.9%
4011054 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 37.0 4.82e-01 95.9% 100.0%
2710690 10.2.1.29 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.64 50.0 5.22e-01 100.0% 88.1%
3819492 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 34.0 2.72e-01 96.4% 25.2%
289259 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.64 51.0 5.15e-01 100.0% 81.8%
3607218 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 39.0 4.29e-01 99.5% 73.0%
2790612 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.63 34.0 4.67e-01 98.6% 99.2%
1232 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.63 51.0 5.39e-01 100.0% 93.9%
3344805 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 38.0 3.90e-01 97.3% 62.2%
4942547 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 43.0 4.67e-01 100.0% 83.7%
3997131 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 35.0 4.43e-01 98.2% 93.8%
3914225 10.32.1.283 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide 0.61 31.0 3.86e-01 99.5% 77.8%
3902712 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.61 40.0 4.18e-01 100.0% 70.7%
3873657 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.61 39.0 4.04e-01 100.0% 66.0%
4135739 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.61 38.0 4.62e-01 98.6% 93.9%
3106452 10.2.1.28 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.60 56.0 4.50e-01 100.0% 85.3%
3831284 207.1.1.465 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3, LRR_4 0.60 33.0 2.56e-01 98.6% 24.1%
5009883 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 39.0 4.51e-01 98.6% 90.0%
3601703 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 4.85e-01 98.6% 94.3%
1176686 10.32.1.77 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.59 39.0 4.66e-01 98.2% 98.0%
3906314 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.58 40.0 4.69e-01 99.1% 99.3%
3601261 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 39.0 4.19e-01 99.1% 78.5%
4768609 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 51.0 4.77e-01 100.0% 78.9%
3515983 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 40.0 4.08e-01 100.0% 76.2%
3493644 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 40.0 4.52e-01 98.2% 98.2%
3168473 10.32.1.306 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF30096 0.55 45.0 4.80e-01 99.5% 98.9%
5041016 10.1.2.181 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 0.55 40.0 4.57e-01 99.1% 100.0%
3611488 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 43.0 4.56e-01 98.6% 91.0%
3730222 10.12.1.107 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 0.54 42.0 3.88e-01 100.0% 62.5%
3898970 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.53 41.0 4.05e-01 100.0% 75.0%
3818089 10.2.1.82 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › C-JID 0.53 36.0 3.66e-01 98.2% 68.2%
3474757 10.32.1.188 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD 0.53 38.0 4.33e-01 96.8% 100.0%
3438681 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 33.0 4.11e-01 79.6% 100.0%
3802129 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.52 35.0 3.08e-01 97.7% 43.5%
5040077 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.52 41.0 4.41e-01 98.6% 97.3%
3620780 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 41.0 4.50e-01 100.0% 99.5%
3621449 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 32.0 3.88e-01 77.4% 95.0%
3770154 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 31.0 3.83e-01 76.9% 95.0%
3901027 11.2.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_CAPS 0.51 30.0 3.79e-01 79.6% 98.5%
4491474 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 39.0 4.28e-01 98.6% 98.3%
3921472 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 33.0 3.87e-01 96.8% 93.5%
3172062 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.50 46.0 4.06e-01 100.0% 84.6%