←Back to structures
putative_coat_protein
Euk-VirTobacco_vein_clearing_virus
putative_coat_protein__NP_569139__Tobacco_vein_clearing_virus__107324
Identity
- Accession:
- NP_569139 ↗
- Protein ID:
- putative_coat_protein
- Kingdom:
- euk
Quality
68.3
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Solendovirus›
Tobacco_vein_clearing_virus
TaxID: 107324
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 233-327
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bajA00 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.69 | 47.0 | 5.28e-01 | 97.9% | 94.4% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.67 | 52.0 | 5.45e-01 | 83.2% | 95.3% |
| 5dckA00 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.65 | 44.0 | 4.94e-01 | 97.9% | 94.4% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.64 | 54.0 | 5.47e-01 | 97.9% | 95.7% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 33.0 | 3.74e-01 | 90.5% | 67.1% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 48.0 | 4.13e-01 | 87.4% | 52.9% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 32.0 | 3.56e-01 | 85.3% | 63.2% |
| 1qrjA02 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.59 | 43.0 | 4.54e-01 | 100.0% | 87.1% |
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 39.0 | 3.57e-01 | 72.6% | 65.9% |
| 3l39A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 39.0 | 3.07e-01 | 70.5% | 94.0% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 42.0 | 4.50e-01 | 97.9% | 98.7% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.55 | 31.0 | 3.27e-01 | 91.6% | 61.0% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 35.0 | 3.15e-01 | 83.2% | 47.8% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.53 | 33.0 | 3.39e-01 | 76.8% | 64.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3459330 | 170.2.1.12 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag | 0.87 | 60.0 | 6.94e-01 | 96.8% | 97.1% |
| 3409030 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.86 | 61.0 | 6.87e-01 | 96.8% | 93.3% |
| 3448000 | 170.2.1.12 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag | 0.85 | 61.0 | 7.01e-01 | 97.9% | 100.0% |
| 3459990 | 170.2.1.12 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag | 0.85 | 59.0 | 6.79e-01 | 97.9% | 97.1% |
| 3923585 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.85 | 59.0 | 6.83e-01 | 97.9% | 97.1% |
| 3300490 | 170.2.1.32 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PF28884 | 0.84 | 68.0 | 7.21e-01 | 96.8% | 95.3% |
| 3926178 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.84 | 58.0 | 6.65e-01 | 98.9% | 95.7% |
| 3501194 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.84 | 59.0 | 6.77e-01 | 97.9% | 98.6% |
| 3573690 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.84 | 58.0 | 6.65e-01 | 97.9% | 97.1% |
| 3518810 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.83 | 58.0 | 6.69e-01 | 98.9% | 97.1% |
| 3568204 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.83 | 59.0 | 6.70e-01 | 97.9% | 95.9% |
| 3510252 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.83 | 58.0 | 6.64e-01 | 98.9% | 97.1% |
| 3309680 | 170.1.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 | 0.82 | 76.0 | 7.21e-01 | 98.9% | 94.5% |
| 3375038 | 170.2.1.25 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 | 0.82 | 62.0 | 6.87e-01 | 98.9% | 98.7% |
| 3377431 | 170.1.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 | 0.82 | 62.0 | 6.86e-01 | 98.9% | 98.7% |
| 3299467 | 170.2.1.25 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 | 0.82 | 76.0 | 7.18e-01 | 98.9% | 94.5% |
| 3858587 | 170.2.1.12 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag | 0.82 | 63.0 | 6.68e-01 | 98.9% | 90.6% |
| 3778083 | 170.1.1.22 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30901 | 0.81 | 55.0 | 5.69e-01 | 97.9% | 73.3% |
| 3841733 | 170.2.1.7 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 | 0.81 | 63.0 | 6.82e-01 | 98.9% | 96.2% |
| 3820660 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.81 | 61.0 | 6.87e-01 | 98.9% | 100.0% |
| 3918449 | 170.2.1.7 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 | 0.80 | 62.0 | 6.56e-01 | 98.9% | 90.6% |
| 3436591 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.80 | 52.0 | 6.22e-01 | 92.6% | 98.4% |
| 3460605 | 170.2.1.12 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag | 0.80 | 62.0 | 6.51e-01 | 98.9% | 90.6% |
| 3934167 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.80 | 59.0 | 6.17e-01 | 98.9% | 85.9% |
| 3927258 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 58.0 | 6.28e-01 | 98.9% | 91.3% |
| 3352002 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 52.0 | 6.13e-01 | 97.9% | 98.5% |
| 3205454 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.78 | 62.0 | 6.59e-01 | 98.9% | 94.1% |
| 3906715 | 170.1.1.22 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30901 | 0.77 | 53.0 | 5.59e-01 | 96.8% | 78.8% |
| 3937079 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.77 | 56.0 | 6.17e-01 | 98.9% | 96.0% |
| 3937208 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.76 | 56.0 | 6.16e-01 | 98.9% | 97.3% |
| 3171256 | 304.48.1.58 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TYA | 0.75 | 56.0 | 5.60e-01 | 96.8% | 76.8% |
| 3928749 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.75 | 60.0 | 6.14e-01 | 98.9% | 88.9% |
| 3170504 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.75 | 60.0 | 6.19e-01 | 98.9% | 90.0% |
| 3324259 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.75 | 67.0 | 6.77e-01 | 97.9% | 100.0% |
| 3639813 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.71 | 54.0 | 5.75e-01 | 97.9% | 96.2% |
| 2984623 | 170.1.1.5 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Gag_p24_C | 0.70 | 51.0 | 5.17e-01 | 96.8% | 77.9% |
| 3555927 | 138.1.1.11 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC_C | 0.67 | 57.0 | 5.57e-01 | 98.9% | 86.7% |
| 3935441 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.65 | 47.0 | 5.01e-01 | 98.9% | 91.3% |
| 4028364 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.63 | 54.0 | 5.38e-01 | 98.9% | 92.0% |
| 1558678 | 170.2.1.1 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 | 0.61 | 55.0 | 5.13e-01 | 100.0% | 89.2% |
| 5007095 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.54 | 41.0 | 3.76e-01 | 82.1% | 78.5% |
| 3903482 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.52 | 38.0 | 3.63e-01 | 88.4% | 65.2% |
| 2817644 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.52 | 37.0 | 3.53e-01 | 74.7% | 87.5% |
D2
medium
residues 14-154
Domain cluster:
representative
D3
medium
residues 337-448
Domain cluster:
rep: coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168__D560-659
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22909.2 best | Caulimovir_coat_dom | 53.7 | 3.40e-14 | 98.2% | 85.8% |