putative_coat_protein

Euk-Vir

Gremmeniella_abietina_RNA_virus_MS1

putative_coat_protein__NP_659028__Gremmeniella_abietina_RNA_virus_MS1__191436

Identity

63.1 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Gammapartitivirus› Gremmeniella_abietina_RNA_virus_MS1

TaxID: 191436

View cluster (8 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-222

PDB

Domain cluster: rep: capsid_protein__YP_009259751__Pseudogymnoascus_destructans_partitivirus-pa__1685502__D62-213_326-352

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20895.3 best	PsV_CP	127.8	8.90e-37	100.0%	35.1%

D2 high residues 381-442

PDB

D3 medium residues 226-296

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20895.3 best	PsV_CP	73.7	2.40e-20	100.0%	17.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ogiB00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.62	50.0	3.67e-01	88.7%	87.6%
1ks9A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.56	44.0	3.72e-01	87.3%	99.2%
3r31A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.53	41.0	2.89e-01	85.9%	60.1%
3enpA00	3.30.2380.10	Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB	0.50	39.0	3.13e-01	91.5%	94.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4955130	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.68	55.0	5.00e-01	97.2%	65.6%
3706499	604.9.1.0 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20	0.56	39.0	4.13e-01	73.2%	95.0%