←Back to structures

putative_coat_protein

Euk-Vir

Sclerotinia_sclerotiorum_partitivirus_S

putative_coat_protein__YP_003082249__Sclerotinia_sclerotiorum_partitivirus_S__659497

Identity

Accession:: YP_003082249 ↗
Protein ID:: putative_coat_protein
Kingdom:: euk

Quality

48.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Sclerotinia_sclerotiorum_partitivirus_S

TaxID: 659497

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 113-173

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k9yA00	1.20.5.510	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin	0.67	35.0	4.14e-01	75.4%	73.2%
8evkA01	3.30.1130.10	Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain	0.66	45.0	3.79e-01	98.4%	40.7%
2cpmA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.65	38.0	3.32e-01	75.4%	37.2%
1go3F02	6.10.140.10	Special › Helix non-globular › Helix Hairpins ›	0.64	30.0	3.39e-01	73.8%	55.3%
2xadA00	3.40.50.10320	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like	0.59	48.0	3.16e-01	93.4%	20.8%
2rrdA00	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.58	42.0	3.60e-01	77.0%	90.1%
1x3aA00	1.10.3970.10	Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain	0.58	45.0	3.94e-01	88.5%	93.0%
1f32A02	3.30.1120.50	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3	0.55	36.0	3.65e-01	73.8%	68.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970206	857.1.1.0 ↗	a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like	0.63	44.0	4.35e-01	85.2%	67.7%
5030257	221.1.2.5 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4	0.61	43.0	3.10e-01	78.7%	24.9%
3853421	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	38.0	2.73e-01	70.5%	21.1%
3734626	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.59	48.0	3.31e-01	91.8%	42.3%
3215306	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.59	44.0	4.04e-01	83.6%	65.9%
4950545	2484.1.1.18 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1	0.56	43.0	3.28e-01	82.0%	95.0%
3315600	3764.1.1.0 ↗	alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain	0.56	33.0	3.49e-01	73.8%	63.6%
4397870	3456.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4	0.54	40.0	3.39e-01	83.6%	48.7%
3970007	3502.1.1.0 ↗	alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein	0.52	38.0	3.61e-01	86.9%	62.7%
3715217	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.52	34.0	2.60e-01	73.8%	24.7%
3711291	375.10.1.0 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha	0.50	37.0	3.73e-01	78.7%	86.7%
3812411	101.1.1.69 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7	0.50	38.0	3.20e-01	78.7%	65.3%
3590293	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.50	30.0	3.19e-01	72.1%	65.5%

D2 medium residues 174-239_344-407

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929476	1075.1.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane	0.50	37.0	2.91e-01	76.9%	87.0%

D3 medium residues 240-343

PDB

D4 medium residues 408-496

PDB