putative_coat_protein

Euk-Vir

Ustilaginoidea_virens_RNA_virus_1

putative_coat_protein__YP_007761588__Ustilaginoidea_virens_RNA_virus_1__1312445

Identity

70.8 mean pLDDT

View cluster (28 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 496-630

PDB

Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	88.2	5.30e-25	100.0%	20.7%

D2 medium residues 92-123_255-319_342-353

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	94.3	7.50e-27	75.2%	10.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lseA00	1.20.120.1360	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.65	33.0	3.50e-01	70.6%	52.5%
3hx0K01	1.10.150.110	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like	0.51	29.0	3.28e-01	85.3%	73.5%
3hulA02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.50	33.0	3.34e-01	100.0%	64.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3741007	109.4.1.152 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7	0.58	43.0	3.14e-01	78.0%	65.9%
4970290	633.10.1.43 ↗	alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › FIMAH	0.56	32.0	3.56e-01	70.6%	72.3%

D3 medium residues 124-254_320-341

PDB

Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	92.4	2.80e-26	98.0%	20.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o83A00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.52	36.0	2.61e-01	71.2%	90.3%
4w8oB00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.51	38.0	2.74e-01	75.8%	92.8%
3qyaA00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.51	37.0	2.68e-01	73.9%	93.2%
3e53A00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.51	35.0	2.55e-01	70.6%	95.5%
1ffyA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.50	36.0	2.66e-01	71.9%	82.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3004619	2003.1.10.7 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSP_synth	0.53	26.0	3.03e-01	95.4%	63.0%

D4 medium residues 365-390_456-469_648-682

PDB

Domain cluster: representative