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putative_coat_protein

Euk-Vir

Carnation_cryptic_virus_3

putative_coat_protein__YP_009362098__Carnation_cryptic_virus_3__1980625

Identity

Accession:
YP_009362098 ↗
Protein ID:
putative_coat_protein
Kingdom:
euk

Quality

69.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Carnation_cryptic_virus_3

TaxID: 1980625

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-265
PDB
Domain cluster: rep: putative_coat_protein__YP_009466860__Pepper_cryptic_virus_1__369643__D52-225
D2 medium residues 268-322_368-407
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.64 39.0 3.94e-01 74.7% 59.6%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 40.0 4.10e-01 74.7% 67.7%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 36.0 3.60e-01 74.7% 58.9%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.59 42.0 3.70e-01 76.8% 95.4%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.73e-01 74.7% 72.6%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.66e-01 71.6% 61.6%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 42.0 4.18e-01 76.8% 98.0%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.39e-01 75.8% 53.6%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 36.0 2.56e-01 70.5% 20.9%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.56 39.0 3.64e-01 72.6% 69.1%
3q2uA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 41.0 3.33e-01 81.1% 62.7%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.55 35.0 3.79e-01 81.1% 76.5%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.76e-01 80.0% 97.7%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.22e-01 74.7% 68.6%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.53 36.0 3.60e-01 75.8% 67.7%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 36.0 3.67e-01 73.7% 72.2%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.53 38.0 3.63e-01 75.8% 67.9%
2ii3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 36.0 2.85e-01 74.7% 79.5%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 37.0 3.65e-01 75.8% 71.7%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 34.0 2.66e-01 75.8% 29.9%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.51 36.0 3.46e-01 74.7% 61.9%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.87e-01 75.8% 35.9%
6h05A00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 36.0 2.76e-01 74.7% 78.0%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 35.0 3.27e-01 72.6% 81.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3523036 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.63 40.0 3.82e-01 74.7% 54.5%
3996241 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.63 44.0 3.91e-01 72.6% 72.1%
3991064 319.1.1.11 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS 0.62 44.0 3.93e-01 74.7% 56.1%
3224251 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.62 44.0 3.53e-01 74.7% 58.5%
3269973 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.61 40.0 4.01e-01 71.6% 66.3%
4979177 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.60 40.0 3.96e-01 74.7% 64.0%
4991896 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.60 39.0 4.04e-01 75.8% 70.5%
3623628 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.60 43.0 2.91e-01 74.7% 23.5%
3475490 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.59 42.0 3.81e-01 74.7% 69.2%
4934212 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 39.0 3.92e-01 77.9% 68.4%
4948199 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 39.0 3.96e-01 77.9% 70.5%
5061342 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.57 39.0 3.85e-01 78.9% 64.8%
5029814 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 36.0 4.15e-01 73.7% 95.4%
3505041 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 38.0 3.63e-01 75.8% 59.1%
4614530 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 37.0 3.48e-01 74.7% 53.3%
3612888 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.56 40.0 3.76e-01 76.8% 60.0%
3814973 4081.1.1.10 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Gpi16 0.56 40.0 3.27e-01 75.8% 48.6%
4963976 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.56 37.0 4.02e-01 73.7% 81.2%
4487061 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.55 41.0 3.31e-01 75.8% 46.5%
3241484 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 38.0 3.78e-01 80.0% 67.0%
4943974 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 35.0 3.42e-01 74.7% 56.4%
3960033 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 39.0 3.22e-01 75.8% 41.2%
3581757 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.55 39.0 3.02e-01 75.8% 33.3%
5080913 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.53 34.0 2.20e-01 75.8% 12.5%
3967053 223.1.1.65 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE5 0.53 31.0 3.22e-01 71.6% 61.2%
3718004 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 38.0 2.77e-01 76.8% 33.1%
5026790 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 38.0 3.81e-01 76.8% 93.0%
5074212 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 37.0 3.60e-01 74.7% 79.1%
3525910 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 36.0 3.48e-01 72.6% 72.7%
3243630 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 32.0 3.30e-01 75.8% 64.4%
1835333 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 37.0 3.40e-01 74.7% 59.3%
3519584 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 32.0 3.11e-01 75.8% 55.5%
4957499 223.1.1.192 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7287 0.50 36.0 3.29e-01 75.8% 92.5%
5023086 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.50 35.0 3.25e-01 72.6% 63.2%
3340753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.93e-01 80.0% 96.5%