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putative_coat_protein
Euk-VirZostera_marina_amalgavirus_1
putative_coat_protein__YP_009362303__Zostera_marina_amalgavirus_1__1985202
Identity
- Accession:
- YP_009362303 ↗
- Protein ID:
- putative_coat_protein
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Amalgaviridae›
Amalgavirus›
Zostera_marina_amalgavirus_1
TaxID: 1985202
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-120
Domain cluster:
rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144
D2
medium
residues 189-284
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 42.0 | 3.21e-01 | 80.2% | 74.4% |
| 2fbaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 47.0 | 3.01e-01 | 96.9% | 59.6% |
| 2ondA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 42.0 | 2.90e-01 | 100.0% | 26.0% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 35.0 | 3.58e-01 | 71.9% | 67.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4615987 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.53 | 41.0 | 3.15e-01 | 94.8% | 35.6% |
| 4141759 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.52 | 39.0 | 3.07e-01 | 94.8% | 34.8% |
| 4547023 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.51 | 40.0 | 3.14e-01 | 94.8% | 37.2% |
| 3680264 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.51 | 38.0 | 2.68e-01 | 83.3% | 45.3% |
| 3306869 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 38.0 | 2.74e-01 | 81.2% | 55.8% |