putative_coat_protein

Euk-Vir

Spinach_amalgavirus_1

putative_coat_protein__YP_009388305__Spinach_amalgavirus_1__1985164

Identity

74.9 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Amalgaviridae› Amalgavirus› Spinach_amalgavirus_1

TaxID: 1985164

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-127

PDB

Domain cluster: rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2nr9A00	1.20.1540.10	Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like	0.61	51.0	4.28e-01	91.7%	99.0%
1qamA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.56	39.0	4.40e-01	82.6%	100.0%
1gakA00	1.20.150.10	Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein	0.51	39.0	3.63e-01	81.7%	75.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4524350	1025.1.1.1 ↗	alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin_helical	0.56	40.0	4.07e-01	75.2%	97.3%
3939529	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.56	41.0	3.19e-01	76.1%	70.4%
4595949	1025.1.1.0 ↗	alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain	0.55	38.0	3.86e-01	72.5%	97.3%
3483536	5059.1.1.0 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter	0.55	29.0	2.87e-01	89.0%	45.0%
3464281	3755.4.1.17 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N	0.52	41.0	3.85e-01	87.2%	87.9%
5028028	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.52	40.0	3.83e-01	86.2%	96.3%
4953234	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.50	35.0	2.48e-01	70.6%	77.8%

D2 medium residues 195-305

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1y6xA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.77	38.0	4.31e-01	71.2%	62.1%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.60	41.0	4.13e-01	72.1%	95.7%
2v5cA03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.52	39.0	3.67e-01	98.2%	65.4%
2ondA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	40.0	3.00e-01	86.5%	45.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3966985	3922.1.1.19 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF1090	0.56	42.0	4.39e-01	77.5%	85.6%
3252229	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	41.0	2.73e-01	76.6%	54.7%
3062952	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.56	27.0	2.80e-01	86.5%	48.1%
3627759	109.4.1.192 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8	0.54	41.0	2.75e-01	94.6%	21.7%
4328717	604.5.1.41 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PigN	0.53	30.0	2.55e-01	83.8%	34.9%