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putative_coat_protein
Euk-VirPanax_notoginseng_virus_B
putative_coat_protein__YP_009551936__Panax_notoginseng_virus_B__2248770
Identity
- Accession:
- YP_009551936 ↗
- Protein ID:
- putative_coat_protein
- Kingdom:
- euk
Quality
82.5
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 468-542
Domain cluster:
rep: putative_coat_protein__YP_009225664__Panax_notoginseng_virus_A__1777016__D473-531
D2
medium
residues 121-172_270-313_348-434
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 96.0 | 2.30e-27 | 48.1% | 19.6% |
| PF09220.17 | LA-virus_coat | 55.2 | 5.70e-15 | 29.5% | 11.6% |
| PF09220.17 | LA-virus_coat | 60.2 | 1.70e-16 | 28.4% | 10.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.88 | 85.0 | 5.59e-01 | 100.0% | 48.1% |
| 4gywA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 25.0 | 3.11e-01 | 73.2% | 72.1% |
D3
medium
residues 173-269_329-347
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 101.7 | 4.30e-29 | 84.5% | 19.9% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.90 | 87.0 | 5.20e-01 | 100.0% | 27.0% |
| 4pzaB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 37.0 | 3.07e-01 | 70.7% | 80.2% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 39.0 | 2.75e-01 | 75.0% | 67.7% |
| 1gytL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 35.0 | 3.07e-01 | 70.7% | 100.0% |
| 7jgsG01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 35.0 | 3.17e-01 | 72.4% | 85.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7654 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.90 | 87.0 | 5.20e-01 | 100.0% | 27.0% |
| 4821589 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.66 | 60.0 | 4.12e-01 | 100.0% | 40.1% |
| 4203747 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.53 | 37.0 | 3.26e-01 | 71.6% | 100.0% |
| 3975473 | 2004.1.1.136 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 | 0.53 | 41.0 | 3.09e-01 | 83.6% | 54.1% |
| 4682611 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.52 | 38.0 | 3.38e-01 | 76.7% | 100.0% |
D4
medium
residues 314-328_435-462_543-559
Domain cluster:
representative
D5
medium
residues 608-677
Domain cluster:
representative