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putative_eIF-2B_eIF-5
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_eIF-2B_eIF-5__YP_003969697__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969697 ↗
- Protein ID:
- putative_eIF-2B_eIF-5
- Kingdom:
- euk
Quality
64.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-96
Domain cluster:
rep: putative_eukaryotic_translation_initiation_factor_5__YP_009094774__Melbournevirus__1560514__D9-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01873.24 best | eIF-5_eIF-2B | 47.8 | 1.70e-12 | 96.8% | 72.7% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9hA01 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.85 | 81.0 | 7.49e-01 | 100.0% | 85.0% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.74 | 54.0 | 5.85e-01 | 96.8% | 89.9% |
| 2i9dA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 41.0 | 3.18e-01 | 73.4% | 92.5% |
| 1hi9A02 | 3.30.1360.130 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein | 0.58 | 44.0 | 4.77e-01 | 98.9% | 100.0% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.55 | 32.0 | 3.73e-01 | 79.8% | 82.1% |
| 2rt3A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 42.0 | 4.24e-01 | 100.0% | 82.5% |
| 2wiiC02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.53 | 30.0 | 3.56e-01 | 78.7% | 83.6% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.53 | 34.0 | 3.83e-01 | 78.7% | 87.3% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 32.0 | 2.91e-01 | 79.8% | 43.1% |
| 4bq2D01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.52 | 40.0 | 3.25e-01 | 83.0% | 97.9% |
| 2vsqA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 36.0 | 2.74e-01 | 72.3% | 74.9% |
| 3jtxB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.22e-01 | 75.5% | 55.5% |
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.51 | 43.0 | 3.79e-01 | 97.9% | 93.9% |
| 3vrdB03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.51 | 35.0 | 3.85e-01 | 79.8% | 90.5% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.50 | 30.0 | 3.46e-01 | 79.8% | 83.6% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054618 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.93 | 73.0 | 7.99e-01 | 86.2% | 95.0% |
| 3622943 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.92 | 70.0 | 7.89e-01 | 78.7% | 100.0% |
| 4948719 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.91 | 63.0 | 6.22e-01 | 76.6% | 67.0% |
| 5057754 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.90 | 74.0 | 7.07e-01 | 95.7% | 76.2% |
| 4127516 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.90 | 69.0 | 7.79e-01 | 84.0% | 100.0% |
| 5037873 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.90 | 73.0 | 7.91e-01 | 89.4% | 98.8% |
| 4431518 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.90 | 70.0 | 7.02e-01 | 86.2% | 80.0% |
| 5071512 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 73.0 | 7.34e-01 | 97.9% | 84.2% |
| 4929638 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 64.0 | 7.45e-01 | 79.8% | 100.0% |
| 4964213 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 72.0 | 7.79e-01 | 89.4% | 98.8% |
| 4059086 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 69.0 | 7.50e-01 | 86.2% | 95.0% |
| 4943550 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 71.0 | 7.70e-01 | 87.2% | 97.5% |
| 4932760 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.89 | 68.0 | 7.65e-01 | 84.0% | 100.0% |
| 4938005 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.88 | 70.0 | 7.55e-01 | 87.2% | 96.2% |
| 4501296 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.88 | 72.0 | 7.83e-01 | 88.3% | 100.0% |
| 3689573 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.88 | 84.0 | 7.75e-01 | 100.0% | 86.1% |
| 4942688 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.88 | 70.0 | 7.62e-01 | 87.2% | 97.5% |
| 5027202 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 71.0 | 7.67e-01 | 89.4% | 98.8% |
| 4995344 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 71.0 | 7.16e-01 | 89.4% | 84.2% |
| 4975148 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 73.0 | 6.98e-01 | 92.6% | 78.1% |
| 4102573 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 70.0 | 7.64e-01 | 88.3% | 98.8% |
| 4934946 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 71.0 | 7.70e-01 | 90.4% | 100.0% |
| 1138120 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 66.0 | 6.65e-01 | 83.0% | 78.7% |
| 4982942 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.87 | 72.0 | 7.10e-01 | 92.6% | 82.0% |
| 4345475 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.86 | 69.0 | 6.93e-01 | 87.2% | 82.1% |
| 4942419 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.86 | 70.0 | 7.54e-01 | 89.4% | 98.8% |
| 3482679 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 72.0 | 7.55e-01 | 90.4% | 96.5% |
| 3597966 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 81.0 | 8.09e-01 | 98.9% | 100.0% |
| 4024063 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.85 | 69.0 | 6.89e-01 | 87.2% | 83.2% |
| 4038458 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.85 | 68.0 | 6.83e-01 | 88.3% | 83.2% |
| 3831826 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.84 | 69.0 | 7.45e-01 | 90.4% | 100.0% |
| 3612108 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.84 | 61.0 | 7.00e-01 | 76.6% | 100.0% |
| 1679095 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.84 | 62.0 | 6.38e-01 | 81.9% | 80.9% |
| 5000291 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.83 | 70.0 | 7.17e-01 | 92.6% | 92.2% |
| 5028744 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.83 | 67.0 | 6.84e-01 | 93.6% | 87.8% |
| 3595844 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 69.0 | 7.26e-01 | 87.2% | 96.5% |
| 4809804 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.79 | 64.0 | 6.30e-01 | 86.2% | 81.2% |
| 4958759 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.71 | 54.0 | 5.80e-01 | 80.9% | 98.8% |
| 5024287 | 103.5.1.11 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 | 0.66 | 43.0 | 4.72e-01 | 75.5% | 82.7% |
| 5033197 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.65 | 43.0 | 5.01e-01 | 73.4% | 100.0% |
| 3989300 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.64 | 50.0 | 4.76e-01 | 83.0% | 95.5% |
| 5028902 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 47.0 | 5.13e-01 | 89.4% | 100.0% |
| 4064079 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 47.0 | 5.01e-01 | 80.9% | 98.8% |
| 4207520 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.60 | 41.0 | 4.53e-01 | 78.7% | 89.3% |
| 4957076 | 101.1.9.134 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 | 0.60 | 35.0 | 4.11e-01 | 71.3% | 88.3% |
| 3606100 | 2004.1.1.74 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1,YGR210-like_G4 | 0.59 | 50.0 | 3.37e-01 | 93.6% | 63.1% |
| 4090636 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.58 | 35.0 | 3.90e-01 | 79.8% | 80.0% |
| 1827815 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 34.0 | 3.85e-01 | 80.9% | 82.4% |
| 3937043 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 45.0 | 4.57e-01 | 94.7% | 90.5% |
| 3629559 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 39.0 | 4.17e-01 | 76.6% | 96.2% |
| 2798015 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.54 | 47.0 | 3.19e-01 | 97.9% | 80.9% |
| 3386540 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.53 | 45.0 | 3.55e-01 | 97.9% | 65.5% |
| 4999991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.85e-01 | 83.0% | 71.3% |
| 1152687 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.53 | 42.0 | 4.09e-01 | 100.0% | 79.2% |
| 4051681 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.52 | 33.0 | 2.99e-01 | 76.6% | 43.7% |
| 4951345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.89e-01 | 85.1% | 74.5% |
| 2735878 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.51 | 43.0 | 4.16e-01 | 100.0% | 83.8% |