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putative_elongation_factor

Euk-Vir

Turkeypox_virus

putative_elongation_factor__YP_009177074__Turkeypox_virus__336486

Identity

Accession:
YP_009177074 ↗
Protein ID:
putative_elongation_factor
Kingdom:
euk

Quality

78.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-101
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06129.19 best Chordopox_G3 40.2 6.40e-10 100.0% 50.0%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 59.0 4.47e-01 91.5% 63.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 65.0 5.05e-01 100.0% 67.7%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 63.0 5.26e-01 100.0% 78.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 4.87e-01 100.0% 58.9%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 55.0 4.17e-01 88.1% 62.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 50.0 3.97e-01 76.3% 96.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 50.0 4.97e-01 76.3% 83.3%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 38.0 3.11e-01 72.9% 29.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 5.10e-01 100.0% 76.1%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 47.0 4.04e-01 78.0% 74.3%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.64 53.0 4.15e-01 100.0% 64.6%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 3.68e-01 100.0% 63.9%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 54.0 4.18e-01 96.6% 57.9%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.62 41.0 3.89e-01 88.1% 58.0%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.54e-01 100.0% 84.5%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 3.52e-01 100.0% 67.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.15e-01 100.0% 62.3%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 50.0 3.83e-01 96.6% 53.6%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 51.0 4.99e-01 98.3% 95.3%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 41.0 3.28e-01 74.6% 48.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 48.0 3.56e-01 93.2% 62.3%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.59 50.0 3.93e-01 98.3% 46.6%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.91e-01 100.0% 71.0%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 52.0 3.95e-01 100.0% 46.4%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 3.71e-01 98.3% 71.5%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.58 39.0 2.55e-01 71.2% 94.5%
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 41.0 3.15e-01 76.3% 70.5%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 49.0 3.09e-01 100.0% 79.4%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 45.0 4.26e-01 84.7% 87.3%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.12e-01 79.7% 73.4%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.57e-01 91.5% 63.9%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 4.30e-01 100.0% 86.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 51.0 3.36e-01 100.0% 94.2%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.49e-01 100.0% 61.5%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.56 47.0 3.52e-01 100.0% 81.3%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 3.81e-01 88.1% 54.9%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 47.0 3.06e-01 100.0% 82.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 3.64e-01 86.4% 50.5%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 47.0 3.93e-01 100.0% 90.0%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 49.0 4.11e-01 100.0% 87.0%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 42.0 3.51e-01 86.4% 48.1%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.62e-01 83.1% 92.9%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.53 38.0 3.79e-01 78.0% 73.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.92e-01 100.0% 76.9%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.52 44.0 2.83e-01 100.0% 94.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.30e-01 100.0% 91.7%
2jkbA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.16e-01 100.0% 68.2%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.15e-01 100.0% 65.8%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.52 38.0 3.15e-01 83.1% 52.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 40.0 3.48e-01 84.7% 75.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.73e-01 100.0% 24.0%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 41.0 3.99e-01 100.0% 81.7%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 4.27e-01 93.2% 100.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026536 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.73 66.0 5.11e-01 100.0% 66.9%
4028811 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.73 64.0 5.15e-01 100.0% 69.6%
4024016 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 55.0 4.30e-01 84.7% 57.6%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.70 63.0 5.28e-01 100.0% 68.0%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.70 62.0 4.87e-01 100.0% 58.9%
3731812 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.69 57.0 4.15e-01 91.5% 44.4%
3928361 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.68 60.0 4.57e-01 100.0% 73.6%
3934851 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 5.01e-01 98.3% 92.0%
3593811 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 4.71e-01 100.0% 91.2%
4000877 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.67 58.0 4.36e-01 100.0% 57.4%
3620222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 4.65e-01 100.0% 74.2%
3411714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.72e-01 100.0% 70.0%
3649484 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.64 54.0 4.08e-01 100.0% 73.8%
3279607 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.64 56.0 4.73e-01 100.0% 89.0%
3291702 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 52.0 3.90e-01 93.2% 51.0%
1124180 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.63 56.0 4.29e-01 100.0% 58.5%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.79e-01 100.0% 87.3%
4323652 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 46.0 3.78e-01 86.4% 43.8%
3486642 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.62 50.0 3.47e-01 98.3% 25.1%
3233815 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 46.0 3.02e-01 100.0% 18.5%
3567079 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.62 48.0 3.27e-01 83.1% 36.1%
2392667 9.11.1.3 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › Nm-ACP 0.62 54.0 4.55e-01 100.0% 85.4%
3933782 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.62 45.0 4.06e-01 98.3% 55.3%
3828657 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.55e-01 100.0% 85.0%
4957336 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 3.26e-01 98.3% 17.0%
4984134 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 54.0 5.05e-01 100.0% 82.7%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.61 42.0 4.51e-01 98.3% 95.6%
3998402 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 47.0 4.08e-01 100.0% 54.3%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 47.0 4.69e-01 100.0% 86.7%
3512143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.62e-01 100.0% 83.1%
3927663 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.21e-01 100.0% 72.3%
3502388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.10e-01 100.0% 65.3%
3485287 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 53.0 3.60e-01 100.0% 49.3%
5063688 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 51.0 4.52e-01 100.0% 69.7%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 49.0 4.84e-01 100.0% 87.7%
3922974 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 48.0 3.02e-01 98.3% 92.8%
3786102 4026.1.1.2 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Bud3_N 0.58 47.0 3.49e-01 100.0% 55.3%
4308195 71.1.1.1 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.58 49.0 3.52e-01 100.0% 75.8%
3924149 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.41e-01 100.0% 94.0%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.57 50.0 3.16e-01 100.0% 25.9%
3739446 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 43.0 3.69e-01 81.4% 66.3%
3615320 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 45.0 2.85e-01 98.3% 88.9%
3175950 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 45.0 2.86e-01 100.0% 82.7%
3734570 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 44.0 2.82e-01 98.3% 87.7%
2033715 3804.1.1.1 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.55 44.0 2.94e-01 98.3% 20.8%
3925408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.39e-01 100.0% 100.0%
3787118 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 44.0 2.84e-01 100.0% 93.9%
3921260 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 43.0 3.44e-01 86.4% 46.7%
3610290 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 2.79e-01 100.0% 97.8%
3234330 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.30e-01 79.7% 43.6%
3739953 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.54 44.0 3.37e-01 96.6% 66.5%
3710203 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 2.75e-01 100.0% 97.3%
3717786 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 2.70e-01 100.0% 94.6%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.54 46.0 3.40e-01 100.0% 45.1%
3817281 10.1.1.58 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.54 44.0 3.11e-01 100.0% 62.6%
3739062 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 44.0 2.71e-01 100.0% 96.5%
3814412 10.1.1.58 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.53 44.0 3.10e-01 100.0% 65.5%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 44.0 4.28e-01 100.0% 84.6%
5065441 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 3.96e-01 84.7% 90.6%
3267416 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 43.0 3.98e-01 100.0% 68.8%
3579405 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 44.0 2.97e-01 100.0% 43.8%
3900208 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 44.0 4.29e-01 100.0% 87.5%
3242315 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.52 42.0 4.41e-01 96.6% 96.4%
3509390 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.52e-01 96.6% 85.0%
3495596 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 45.0 3.04e-01 100.0% 54.8%
3466098 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.51 42.0 2.75e-01 100.0% 44.1%