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putative_endonuclease_4
Euk-VirGolden_Marseillevirus
putative_endonuclease_4__YP_009310312__Golden_Marseillevirus__1720526
Identity
- Accession:
- YP_009310312 ↗
- Protein ID:
- putative_endonuclease_4
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Golden_Marseillevirus
TaxID: 1720526
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-145
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ltyA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.69 | 43.0 | 3.34e-01 | 79.5% | 28.5% |
| 2x7vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.65 | 60.0 | 4.56e-01 | 100.0% | 47.2% |
| 3guwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.64 | 44.0 | 3.57e-01 | 100.0% | 38.6% |
| 2x6qA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.64 | 35.0 | 3.07e-01 | 77.2% | 34.0% |
| 4oo3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 35.0 | 3.36e-01 | 99.2% | 46.2% |
| 1bxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.62 | 57.0 | 3.98e-01 | 100.0% | 42.9% |
| 1gz1A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.60 | 55.0 | 3.94e-01 | 100.0% | 46.4% |
| 6gn6A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 44.0 | 3.30e-01 | 100.0% | 29.9% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 38.0 | 3.80e-01 | 80.3% | 61.4% |
| 1k87A03 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.60 | 52.0 | 3.72e-01 | 100.0% | 33.5% |
| 4wfqA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.59 | 37.0 | 3.21e-01 | 74.0% | 40.6% |
| 2hk0A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 53.0 | 4.11e-01 | 100.0% | 49.0% |
| 1rh9A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 49.0 | 3.50e-01 | 100.0% | 31.9% |
| 1bifA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 3.53e-01 | 100.0% | 46.6% |
| 3q9cA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.56 | 41.0 | 2.98e-01 | 74.8% | 92.7% |
| 3gycA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 50.0 | 3.60e-01 | 98.4% | 60.9% |
| 3ucxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 49.0 | 3.95e-01 | 100.0% | 58.1% |
| 8b3yA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 49.0 | 3.68e-01 | 100.0% | 49.7% |
| 6jh7B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 3.80e-01 | 100.0% | 61.4% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 47.0 | 3.82e-01 | 100.0% | 61.7% |
| 5bwiA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 47.0 | 3.56e-01 | 100.0% | 49.7% |
| 3i4fC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 47.0 | 3.82e-01 | 100.0% | 73.3% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 48.0 | 4.21e-01 | 100.0% | 83.0% |
| 7t85A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.90e-01 | 100.0% | 68.9% |
| 8j50A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.47e-01 | 100.0% | 59.6% |
| 3evnA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 35.0 | 3.66e-01 | 100.0% | 75.9% |
| 3sy8C02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 38.0 | 3.10e-01 | 98.4% | 40.1% |
| 7tjbA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 43.0 | 3.68e-01 | 100.0% | 56.8% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 44.0 | 3.59e-01 | 100.0% | 50.4% |
| 3lrkA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 45.0 | 3.50e-01 | 100.0% | 51.6% |
| 4eacC01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 45.0 | 3.58e-01 | 100.0% | 48.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591727 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.68 | 39.0 | 3.48e-01 | 96.1% | 40.0% |
| 4927773 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.62 | 45.0 | 3.55e-01 | 100.0% | 35.6% |
| 4160171 | 2002.1.1.89 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_26 | 0.59 | 53.0 | 3.92e-01 | 100.0% | 54.1% |
| None | — | 0.59 | 41.0 | 2.98e-01 | 100.0% | 25.7% | |
| 5045026 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.57 | 32.0 | 3.27e-01 | 96.1% | 54.2% |
| 5065370 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.57 | 40.0 | 3.35e-01 | 100.0% | 40.0% |
| 3420362 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.55 | 48.0 | 3.21e-01 | 100.0% | 24.0% |
| 3203604 | 109.3.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_3, Ank_5 | 0.55 | 42.0 | 2.92e-01 | 81.1% | 30.5% |
| 5077859 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.54 | 47.0 | 3.73e-01 | 100.0% | 70.5% |
| 4215948 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.54 | 39.0 | 4.06e-01 | 100.0% | 80.8% |
| 4461057 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.53 | 48.0 | 3.62e-01 | 99.2% | 93.4% |
| 3729482 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.53 | 47.0 | 3.73e-01 | 100.0% | 57.8% |
| 4020091 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.51 | 45.0 | 3.63e-01 | 96.1% | 62.4% |
| 3443409 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 38.0 | 2.63e-01 | 100.0% | 20.8% |
| 1791490 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.50 | 34.0 | 3.39e-01 | 100.0% | 65.4% |
D2
medium
residues 146-287
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01261.31 best | AP_endonuc_2 | 65.4 | 9.00e-18 | 98.6% | 49.0% |
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aamA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.89 | 80.0 | 6.25e-01 | 100.0% | 49.4% |
| 6ki3A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.88 | 84.0 | 6.39e-01 | 100.0% | 52.5% |
| 1qtwA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.88 | 82.0 | 6.32e-01 | 100.0% | 48.8% |
| 2x7vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.88 | 84.0 | 6.43e-01 | 100.0% | 51.0% |
| 1xp3A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.86 | 81.0 | 6.17e-01 | 98.6% | 48.1% |
| 1bxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.77 | 71.0 | 5.04e-01 | 100.0% | 35.7% |
| 1a0cA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.73 | 68.0 | 4.68e-01 | 100.0% | 32.0% |
| 2q02A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.71 | 64.0 | 5.11e-01 | 100.0% | 50.4% |
| 4hu8A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 62.0 | 4.55e-01 | 100.0% | 44.9% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 60.0 | 4.45e-01 | 100.0% | 75.5% |
| 5okaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 59.0 | 4.08e-01 | 100.0% | 43.1% |
| 7ch9L01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.63 | 39.0 | 4.77e-01 | 90.1% | 100.0% |
| 7jt8I02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.63 | 45.0 | 4.56e-01 | 89.4% | 73.6% |
| 6uqyB01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 53.0 | 4.31e-01 | 93.0% | 81.2% |
| 4aweA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 56.0 | 4.12e-01 | 100.0% | 53.0% |
| 6jqwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.62 | 57.0 | 4.21e-01 | 100.0% | 44.9% |
| 3bmxA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.62 | 55.0 | 4.06e-01 | 100.0% | 48.2% |
| 1z8hA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 52.0 | 4.61e-01 | 90.8% | 79.2% |
| 3zmrB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 56.0 | 4.08e-01 | 100.0% | 55.2% |
| 3oa5B02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 55.0 | 4.06e-01 | 100.0% | 53.1% |
| 1itxA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 55.0 | 4.16e-01 | 100.0% | 79.8% |
| 3kvnA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 52.0 | 4.00e-01 | 92.3% | 74.0% |
| 2wmfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 55.0 | 4.18e-01 | 100.0% | 51.3% |
| 1aq0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 56.0 | 4.30e-01 | 100.0% | 56.2% |
| 1h7mA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.60 | 29.0 | 3.44e-01 | 86.6% | 64.9% |
| 2xn1A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 54.0 | 4.14e-01 | 99.3% | 55.4% |
| 3tvaA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 53.0 | 4.21e-01 | 100.0% | 48.9% |
| 1q6oB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 49.0 | 4.27e-01 | 99.3% | 58.6% |
| 2bvdA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 52.0 | 4.23e-01 | 100.0% | 50.4% |
| 7b7pA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.59 | 50.0 | 4.06e-01 | 90.8% | 92.0% |
| 1vpqA00 | 3.20.20.410 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Protein of unknown function UPF0759 | 0.58 | 53.0 | 4.35e-01 | 100.0% | 71.9% |
| 3tevB00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.58 | 52.0 | 4.09e-01 | 100.0% | 51.9% |
| 2q09A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 52.0 | 4.13e-01 | 99.3% | 63.2% |
| 3k8kA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 3.95e-01 | 100.0% | 47.0% |
| 4p0tB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 46.0 | 4.51e-01 | 88.7% | 78.0% |
| 1w6uD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 50.0 | 4.04e-01 | 97.2% | 84.0% |
| 2lndA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 34.0 | 3.82e-01 | 88.7% | 75.9% |
| 1z06A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 47.0 | 4.53e-01 | 91.5% | 92.7% |
| 1dwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 3.81e-01 | 91.5% | 92.0% |
| 1tqxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 50.0 | 4.32e-01 | 100.0% | 67.9% |
| 1vp4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 49.0 | 4.17e-01 | 97.9% | 75.1% |
| 2cycA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 41.0 | 3.53e-01 | 78.9% | 49.6% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 4.14e-01 | 88.7% | 90.1% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 48.0 | 4.24e-01 | 100.0% | 90.9% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 48.0 | 4.51e-01 | 100.0% | 86.1% |
| 6znpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 4.24e-01 | 97.9% | 69.3% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 49.0 | 3.48e-01 | 100.0% | 40.3% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 3.96e-01 | 100.0% | 71.0% |
| 1p9oA00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.53 | 44.0 | 3.58e-01 | 89.4% | 80.3% |
| 1qlwA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 3.53e-01 | 93.7% | 73.0% |
| 3nutC01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.52 | 33.0 | 3.60e-01 | 90.8% | 77.2% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 34.0 | 3.77e-01 | 88.7% | 84.5% |
| 3db2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 4.23e-01 | 88.7% | 85.7% |
| 3drwB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 45.0 | 3.49e-01 | 100.0% | 60.7% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3506446 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.90 | 82.0 | 5.92e-01 | 97.9% | 38.6% |
| 4616066 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.90 | 83.0 | 6.43e-01 | 100.0% | 48.8% |
| 3255520 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.89 | 83.0 | 6.32e-01 | 100.0% | 47.2% |
| 4082994 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.89 | 84.0 | 6.35e-01 | 100.0% | 47.5% |
| 4579621 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 84.0 | 6.41e-01 | 99.3% | 49.7% |
| 4933857 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 83.0 | 6.45e-01 | 100.0% | 50.5% |
| 4254835 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 81.0 | 6.27e-01 | 100.0% | 49.5% |
| 4036590 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 83.0 | 6.39e-01 | 100.0% | 50.0% |
| 4489627 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 83.0 | 6.32e-01 | 100.0% | 47.8% |
| 140513 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.88 | 84.0 | 6.43e-01 | 100.0% | 51.0% |
| 4340551 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 82.0 | 6.30e-01 | 100.0% | 49.1% |
| 4997671 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 83.0 | 6.36e-01 | 100.0% | 50.3% |
| 4521590 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 82.0 | 6.26e-01 | 100.0% | 48.3% |
| 4662969 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.87 | 81.0 | 6.31e-01 | 100.0% | 50.5% |
| 4654736 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 83.0 | 6.33e-01 | 100.0% | 50.0% |
| 3684953 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 83.0 | 5.82e-01 | 100.0% | 40.8% |
| 4962786 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.87 | 82.0 | 6.28e-01 | 100.0% | 48.6% |
| 4028126 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.86 | 82.0 | 6.18e-01 | 100.0% | 46.1% |
| 3782510 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.86 | 82.0 | 5.99e-01 | 100.0% | 41.8% |
| 3589247 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.86 | 81.0 | 6.15e-01 | 99.3% | 48.0% |
| 4320102 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.86 | 82.0 | 6.15e-01 | 99.3% | 47.7% |
| 4397720 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.86 | 81.0 | 6.28e-01 | 100.0% | 50.5% |
| 4031316 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.85 | 81.0 | 6.20e-01 | 99.3% | 49.7% |
| 4634847 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.84 | 80.0 | 6.19e-01 | 100.0% | 50.4% |
| 5061614 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 72.0 | 5.53e-01 | 100.0% | 44.4% |
| 4969820 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 71.0 | 5.55e-01 | 100.0% | 46.4% |
| 5070822 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.81 | 68.0 | 5.47e-01 | 98.6% | 47.5% |
| 4982468 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.81 | 71.0 | 5.59e-01 | 100.0% | 47.6% |
| 4972192 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.81 | 73.0 | 5.59e-01 | 100.0% | 45.9% |
| 5031476 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.80 | 72.0 | 5.59e-01 | 100.0% | 47.4% |
| 4970919 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.78 | 73.0 | 5.67e-01 | 100.0% | 53.1% |
| 5001042 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.77 | 69.0 | 5.38e-01 | 100.0% | 46.1% |
| 5071446 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.75 | 70.0 | 5.39e-01 | 100.0% | 47.8% |
| 4352767 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.75 | 70.0 | 4.96e-01 | 100.0% | 36.5% |
| 5002109 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.72 | 67.0 | 5.05e-01 | 99.3% | 50.9% |
| 4983806 | 2002.1.1.418 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF7388 | 0.69 | 51.0 | 4.36e-01 | 98.6% | 48.0% |
| 3945647 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.65 | 59.0 | 4.16e-01 | 100.0% | 53.3% |
| 4471974 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.65 | 59.0 | 4.34e-01 | 100.0% | 48.6% |
| 3978414 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.64 | 59.0 | 4.57e-01 | 100.0% | 59.3% |
| 2776404 | 2002.1.1.343 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase, Glyco_hydro_42 | 0.63 | 57.0 | 4.28e-01 | 100.0% | 46.2% |
| 4928712 | 2002.1.1.54 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh | 0.63 | 56.0 | 4.17e-01 | 100.0% | 57.6% |
| 4588510 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.61 | 54.0 | 3.90e-01 | 99.3% | 44.4% |
| 1144734 | 2002.1.1.155 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_98M | 0.61 | 55.0 | 4.33e-01 | 100.0% | 58.0% |
| 4941152 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 53.0 | 3.98e-01 | 96.5% | 94.4% |
| None | — | 0.60 | 54.0 | 4.11e-01 | 99.3% | 53.4% | |
| 4019103 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 54.0 | 4.56e-01 | 100.0% | 69.2% |
| 3346668 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.60 | 54.0 | 3.84e-01 | 100.0% | 54.1% |
| 5015080 | 2004.1.1.1200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 | 0.59 | 45.0 | 4.72e-01 | 99.3% | 88.5% |
| 1171320 | 2002.1.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase | 0.59 | 53.0 | 3.88e-01 | 100.0% | 58.9% |
| 5073940 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.58 | 48.0 | 4.46e-01 | 89.4% | 83.9% |
| 4615208 | 2007.2.2.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › DUF2325 | 0.57 | 34.0 | 4.01e-01 | 88.0% | 84.0% |
| 3273735 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.57 | 47.0 | 4.15e-01 | 88.7% | 69.0% |
| 4937630 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.57 | 48.0 | 4.17e-01 | 91.5% | 89.1% |
| 4036968 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.56 | 44.0 | 4.24e-01 | 82.4% | 76.2% |
| 4530056 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 47.0 | 4.33e-01 | 91.5% | 87.8% |
| 4971974 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 47.0 | 4.55e-01 | 99.3% | 85.0% |
| 4457642 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.54 | 44.0 | 3.91e-01 | 89.4% | 72.0% |
| 4974163 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.53 | 44.0 | 3.90e-01 | 89.4% | 69.6% |
| 4652309 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.53 | 43.0 | 4.32e-01 | 85.9% | 87.6% |
| 4361709 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.53 | 42.0 | 4.03e-01 | 82.4% | 77.5% |
| 4991251 | 2002.1.1.453 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GP88 | 0.53 | 48.0 | 3.83e-01 | 100.0% | 63.2% |
| 4239812 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.53 | 43.0 | 4.25e-01 | 88.0% | 82.6% |
| 3782916 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.53 | 48.0 | 3.93e-01 | 100.0% | 68.5% |
| 4990025 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 44.0 | 3.86e-01 | 90.1% | 92.3% |
| 4645891 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.52 | 43.0 | 4.15e-01 | 88.0% | 80.0% |
| 3838776 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.52 | 40.0 | 3.81e-01 | 90.1% | 69.1% |
| 5018155 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 45.0 | 3.85e-01 | 97.9% | 69.2% |
| 4984246 | 2007.3.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Citrate_bind | 0.51 | 43.0 | 3.97e-01 | 90.8% | 71.9% |
| 5003678 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.50 | 45.0 | 3.76e-01 | 100.0% | 73.1% |
| 3318664 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.50 | 41.0 | 3.95e-01 | 89.4% | 84.2% |