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putative_endonuclease

Euk-Vir

Emiliania_huxleyi_virus_86

putative_endonuclease__YP_293772__Emiliania_huxleyi_virus_86__181082

Identity

Accession:
YP_293772 ↗
Protein ID:
putative_endonuclease
Kingdom:
euk

Quality

83.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Coccolithovirus› Emiliania_huxleyi_virus_86

TaxID: 181082

Cluster

View cluster (65 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-210_299-336
PDB
Domain cluster: rep: 125R__YP_009552406__Cherax_quadricarinatus_iridovirus__2035708__D21-256
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00752.24 best XPG_N 76.5 2.70e-21 42.4% 86.1%
PF00867.24 XPG_I 75.2 6.00e-21 33.3% 92.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5v07Z01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.89 71.0 7.76e-01 84.4% 96.1%
1a76A01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.76 62.0 6.70e-01 84.4% 97.6%
1vbkA03 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 33.0 4.44e-01 88.1% 97.7%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 17.0 3.26e-01 91.8% 87.7%
2a1fC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 43.0 4.41e-01 77.8% 97.9%
5vlcA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 33.0 4.00e-01 74.9% 88.0%
3fhlA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 31.0 4.05e-01 74.1% 95.7%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.54 40.0 4.14e-01 74.5% 100.0%
4q1tB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.54 41.0 4.12e-01 78.6% 97.6%
4ru1A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 29.0 3.73e-01 74.5% 89.3%
2j5vB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 39.0 4.02e-01 75.7% 94.4%
4navA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 36.0 4.08e-01 93.4% 93.4%
4ng4B01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.51 36.0 4.21e-01 82.3% 100.0%
2ozlB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 27.0 3.56e-01 72.8% 91.8%
2xadA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.51 39.0 3.83e-01 79.0% 92.7%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 29.0 3.41e-01 70.4% 80.1%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 37.0 3.78e-01 74.9% 85.3%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4589814 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.95 79.0 7.91e-01 84.4% 95.9%
4024047 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.95 79.0 8.12e-01 84.4% 95.7%
None — 0.93 77.0 8.18e-01 84.4% 95.9%
3701288 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.93 77.0 8.16e-01 84.4% 95.9%
4028346 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 75.0 6.78e-01 84.4% 96.1%
4426402 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 75.0 7.94e-01 84.4% 94.5%
3882124 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 64.0 6.88e-01 84.4% 81.4%
4001799 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 72.0 7.00e-01 84.4% 75.7%
4933316 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.90 74.0 7.76e-01 84.4% 95.1%
4395983 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 74.0 7.85e-01 84.4% 96.4%
4237276 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 73.0 7.84e-01 84.4% 95.2%
3913336 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 64.0 7.42e-01 84.4% 95.7%
3808902 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 62.0 7.30e-01 84.4% 95.6%
4946948 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.89 74.0 7.77e-01 84.4% 95.9%
3484303 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.89 65.0 7.40e-01 84.4% 94.7%
3789016 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 74.0 6.83e-01 84.4% 93.4%
3743690 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 59.0 7.03e-01 84.4% 93.7%
3477276 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 73.0 7.50e-01 84.4% 96.6%
5055638 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.88 71.0 7.66e-01 84.4% 95.2%
3937112 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.87 73.0 7.12e-01 84.8% 81.5%
4956546 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.87 72.0 7.73e-01 84.4% 96.3%
4021778 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.87 72.0 6.68e-01 84.4% 93.1%
4927168 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.87 72.0 7.56e-01 84.4% 96.4%
4020826 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.86 72.0 7.07e-01 84.8% 81.6%
3472483 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.86 72.0 6.53e-01 85.6% 92.9%
3581443 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.85 71.0 6.44e-01 84.8% 73.4%
3875510 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.84 68.0 7.34e-01 84.4% 94.8%
4028970 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.84 72.0 6.98e-01 86.8% 96.6%
3393840 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.84 69.0 7.17e-01 84.4% 96.1%
3518745 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.83 54.0 5.67e-01 84.4% 70.7%
3937732 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.83 59.0 6.66e-01 84.4% 91.6%
3205760 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.83 68.0 6.69e-01 84.4% 95.8%
3238117 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.83 62.0 7.01e-01 84.4% 95.4%
3428426 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.83 65.0 7.12e-01 84.4% 94.6%
3784928 2006.1.4.32 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N 0.82 63.0 6.33e-01 84.4% 77.1%
4964944 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.82 67.0 7.16e-01 84.4% 96.2%
3267380 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.82 67.0 7.00e-01 84.4% 90.7%
5041361 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.81 50.0 6.33e-01 84.4% 96.8%
3520565 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.81 67.0 6.84e-01 84.4% 95.3%
3335892 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.81 73.0 6.87e-01 91.8% 98.2%
3721945 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.81 58.0 6.74e-01 84.4% 96.2%
4023084 2006.1.4.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N 0.81 66.0 6.41e-01 84.4% 77.7%
3170744 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.81 72.0 6.64e-01 91.4% 96.3%
3744314 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.80 74.0 7.03e-01 94.2% 98.2%
3755557 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.80 66.0 6.65e-01 84.4% 85.8%
3874759 2006.1.4.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27242 0.80 66.0 5.85e-01 84.4% 63.4%
3627555 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 63.0 6.89e-01 84.4% 95.6%
3733625 2006.1.4.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N 0.79 64.0 6.34e-01 84.4% 80.0%
3599611 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.79 65.0 6.13e-01 84.4% 76.1%
3823952 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 72.0 7.00e-01 93.4% 98.1%
3718837 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 73.0 6.69e-01 95.1% 99.3%
3938152 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 63.0 6.86e-01 84.4% 96.1%
4028436 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.79 62.0 6.10e-01 84.4% 76.5%
142326 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 65.0 6.75e-01 84.4% 94.7%
4264908 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.79 67.0 7.14e-01 98.4% 97.7%
3638602 2006.1.4.32 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N 0.79 63.0 5.89e-01 84.4% 68.1%
3683988 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.78 64.0 6.85e-01 84.4% 94.4%
3484870 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.78 64.0 6.52e-01 84.4% 92.5%
3610118 2006.1.4.46 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, XPG_I, XPG_I_2 0.78 72.0 6.76e-01 94.7% 99.3%
3641274 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.78 65.0 6.10e-01 84.4% 97.1%
3607366 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.78 64.0 5.90e-01 84.4% 71.0%
3272525 2006.1.4.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N 0.77 61.0 6.02e-01 84.4% 76.9%
4028492 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.77 64.0 6.58e-01 84.4% 95.2%
3498626 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.77 64.0 6.29e-01 85.2% 87.8%
3560378 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.77 64.0 5.85e-01 85.6% 74.4%
5072240 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.76 60.0 6.69e-01 84.0% 98.0%
3709672 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.76 60.0 5.92e-01 84.4% 76.5%
5049771 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.76 63.0 6.57e-01 84.4% 96.0%
3611555 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.76 62.0 5.82e-01 84.4% 75.9%
3182237 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.75 59.0 6.52e-01 84.4% 97.0%
3223707 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.75 62.0 6.28e-01 84.4% 93.3%
5044998 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.75 59.0 6.45e-01 84.4% 95.1%
3613309 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.74 61.0 6.40e-01 84.4% 92.0%
3919202 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.74 67.0 5.60e-01 93.4% 98.4%
3416420 2006.1.4.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27698 0.74 67.0 5.10e-01 94.2% 77.8%
3868746 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.74 65.0 5.87e-01 92.2% 98.4%
4979225 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.74 58.0 6.47e-01 84.0% 98.5%
3893248 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.73 65.0 4.93e-01 92.6% 91.0%
3740632 2006.1.4.32 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N 0.73 60.0 5.57e-01 84.4% 83.4%
4377686 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.72 65.0 4.55e-01 92.6% 73.5%
3781390 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.72 59.0 6.33e-01 84.4% 96.3%
3964138 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.71 50.0 5.78e-01 75.3% 96.1%
3176999 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.70 58.0 5.92e-01 84.4% 95.7%
3824340 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.70 44.0 5.22e-01 88.5% 88.6%
3609329 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.68 54.0 5.86e-01 84.4% 96.1%
3471700 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.68 55.0 5.66e-01 84.8% 86.8%
D2 high residues 215-288
PDB
Domain cluster: rep: IMGVR_UViG_3300002053_001336-3300002053-SMTZ23_100214334__D204-271