putative_enzymatic_polyprotein

Euk-Vir

Rudbeckia_flower_distortion_virus

putative_enzymatic_polyprotein__YP_002519387__Rudbeckia_flower_distortion_virus__587370

Identity

77.2 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Ruflodivirus› Rudbeckia_flower_distortion_virus

TaxID: 587370

View cluster (17 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-186

PDB

Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	117.2	9.90e-34	98.1%	69.2%

D2 high residues 483-555

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D3 high residues 562-694

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	87.3	9.80e-25	82.0%	99.1%
PF17919.8	RT_RNaseH_2	63.1	2.90e-17	59.4%	79.0%

D4 medium residues 236-256_345-372_401-482

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	66.7	3.60e-18	58.8%	41.0%

D5 medium residues 257-344_373-400

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143