Back to structures

putative_eukaryotic_translation_initiation_factor_5

Euk-Vir

Melbournevirus

putative_eukaryotic_translation_initiation_factor_5__YP_009094774__Melbournevirus__1560514

Identity

Accession:
YP_009094774 ↗
Protein ID:
putative_eukaryotic_translation_initiation_factor_5
Kingdom:
euk

Quality

79.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-103
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01873.24 best eIF-5_eIF-2B 56.2 4.50e-15 92.6% 71.8%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.83 74.0 6.90e-01 94.7% 85.0%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.79 61.0 5.68e-01 83.2% 66.4%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.66 59.0 5.71e-01 96.8% 99.1%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.65 59.0 5.18e-01 100.0% 92.9%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 44.0 4.12e-01 71.6% 64.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 41.0 4.49e-01 71.6% 84.4%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.61 45.0 4.06e-01 77.9% 90.3%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.61 45.0 4.32e-01 95.8% 68.5%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.60 41.0 3.76e-01 70.5% 60.0%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 44.0 4.85e-01 80.0% 100.0%
3cgiA00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.60 46.0 4.41e-01 83.2% 80.4%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 51.0 4.60e-01 94.7% 71.4%
2qv6A01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 41.0 3.75e-01 71.6% 62.5%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 42.0 3.71e-01 75.8% 91.1%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.58 39.0 3.39e-01 70.5% 71.3%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 39.0 4.16e-01 71.6% 82.9%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.57 40.0 4.09e-01 71.6% 87.8%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.08e-01 70.5% 90.8%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 51.0 4.61e-01 100.0% 97.7%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 43.0 3.89e-01 81.1% 94.7%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 44.0 4.43e-01 83.2% 89.5%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.55 40.0 3.73e-01 96.8% 61.0%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.74e-01 71.6% 69.8%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 37.0 3.94e-01 71.6% 100.0%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 39.0 3.58e-01 77.9% 70.0%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.53 38.0 3.80e-01 73.7% 79.2%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 37.0 3.63e-01 73.7% 97.2%
2jsxA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.53 35.0 3.91e-01 71.6% 91.5%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 36.0 4.01e-01 71.6% 98.6%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 35.0 3.75e-01 72.6% 85.3%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.76e-01 70.5% 85.2%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.55e-01 71.6% 75.6%
1x8dA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.54e-01 70.5% 80.4%
1l1lA03 3.90.1390.10 Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 0.51 35.0 3.59e-01 71.6% 92.6%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.59e-01 84.2% 74.6%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 40.0 3.98e-01 91.6% 84.5%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 36.0 3.64e-01 74.7% 82.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 33.0 3.75e-01 71.6% 95.6%
2mzjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 34.0 3.61e-01 71.6% 80.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932760 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.92 70.0 7.82e-01 81.1% 100.0%
5054618 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.89 69.0 7.45e-01 85.3% 95.0%
4431518 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.89 68.0 6.89e-01 83.2% 80.0%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.89 61.0 6.00e-01 73.7% 67.0%
1138120 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.89 66.0 6.73e-01 80.0% 78.7%
5037873 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.88 68.0 7.43e-01 84.2% 96.2%
4501296 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.87 69.0 7.45e-01 85.3% 97.5%
5027202 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 67.0 7.31e-01 86.3% 96.2%
4127516 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 65.0 7.28e-01 81.1% 100.0%
4038458 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 66.0 6.68e-01 84.2% 80.0%
4943550 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 65.0 7.08e-01 83.2% 93.8%
5057754 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 70.0 6.79e-01 90.5% 78.1%
4934946 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 67.0 7.31e-01 85.3% 97.5%
1679095 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 63.0 6.48e-01 81.1% 80.9%
3622943 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.86 65.0 7.33e-01 96.8% 100.0%
4938005 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.85 64.0 6.93e-01 82.1% 92.5%
3597966 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 75.0 7.58e-01 93.7% 100.0%
4942419 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.85 65.0 7.05e-01 84.2% 95.0%
4942688 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.85 64.0 6.98e-01 83.2% 93.8%
4929638 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.85 60.0 6.90e-01 76.8% 100.0%
3831826 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.85 67.0 7.25e-01 86.3% 98.8%
5071512 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 68.0 6.87e-01 90.5% 85.3%
4964213 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 65.0 7.07e-01 84.2% 96.2%
3595844 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 67.0 7.03e-01 83.2% 92.9%
3612108 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 60.0 6.87e-01 73.7% 100.0%
4975148 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 67.0 6.52e-01 88.4% 76.2%
4995344 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 65.0 6.53e-01 84.2% 81.1%
3689573 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 77.0 7.12e-01 96.8% 87.8%
4345475 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 63.0 6.37e-01 82.1% 78.9%
4102573 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.84 65.0 6.98e-01 83.2% 96.2%
3482679 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 67.0 7.03e-01 87.4% 94.1%
4059086 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.83 63.0 6.81e-01 81.1% 93.8%
4024063 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.82 63.0 6.30e-01 81.1% 80.0%
5000291 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.82 65.0 6.74e-01 88.4% 88.9%
4982942 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.81 68.0 6.75e-01 89.5% 86.0%
5028744 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.80 63.0 6.50e-01 88.4% 88.9%
4809804 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.79 62.0 6.14e-01 84.2% 78.2%
4649672 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.71 56.0 6.09e-01 90.5% 100.0%
5033817 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.67 53.0 5.72e-01 89.5% 100.0%
4037292 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 52.0 5.53e-01 96.8% 98.8%
5065987 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 54.0 5.69e-01 93.7% 98.8%
5054685 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 52.0 5.56e-01 90.5% 100.0%
5047025 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.65 52.0 5.49e-01 94.7% 96.5%
5074412 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.65 51.0 5.47e-01 91.6% 100.0%
4140374 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.64 52.0 5.43e-01 93.7% 97.6%
4969157 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.64 49.0 5.28e-01 89.5% 97.5%
5078854 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.63 56.0 5.15e-01 100.0% 98.4%
3784937 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.62 43.0 3.74e-01 72.6% 97.3%
4158584 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.62 55.0 4.99e-01 100.0% 98.5%
4017316 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.62 44.0 3.61e-01 73.7% 92.6%
3698115 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.62 45.0 3.74e-01 76.8% 96.5%
5036255 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.61 54.0 5.07e-01 100.0% 81.7%
4435772 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.61 53.0 4.93e-01 100.0% 95.9%
5015890 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 48.0 4.94e-01 100.0% 95.6%
3900717 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.58 42.0 4.55e-01 81.1% 92.4%
3387138 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.58 37.0 4.06e-01 70.5% 82.7%
3631329 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 38.0 4.20e-01 70.5% 92.0%
3971738 304.8.1.102 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_3, ACT_7 0.56 43.0 4.00e-01 85.3% 96.9%
3204288 327.11.2.68 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Mug60-KHD4, PF29984, PF29998 0.56 41.0 2.69e-01 77.9% 34.7%
4999682 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.55 34.0 3.67e-01 75.8% 76.0%
4970834 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.54 38.0 3.76e-01 71.6% 82.0%
3202787 327.11.2.38 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_1 0.54 37.0 4.09e-01 71.6% 97.1%
5036416 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 37.0 3.84e-01 70.5% 91.8%
3707907 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.53 40.0 3.86e-01 84.2% 81.7%
3914050 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 37.0 3.91e-01 91.6% 83.5%
3639719 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.52 39.0 4.17e-01 82.1% 95.0%
3821198 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.52 46.0 3.90e-01 96.8% 91.0%
3532818 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 36.0 3.84e-01 71.6% 91.3%
4341664 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 35.0 3.76e-01 70.5% 85.0%
3706340 319.1.1.12 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C 0.51 36.0 3.25e-01 71.6% 78.5%
3717555 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 42.0 3.07e-01 95.8% 96.7%
4206669 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 34.0 3.81e-01 70.5% 95.7%