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putative_glycoprotein
Euk-VirNyavirus_midwayense
putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609
Identity
- Accession:
- YP_002905332 ↗
- Protein ID:
- putative_glycoprotein
- Kingdom:
- euk
Quality
65.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Nyamiviridae›
Nyavirus›
Nyavirus_midwayense
TaxID: 644609
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 72-196
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 31.0 | 3.32e-01 | 71.2% | 55.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.83 | 77.0 | 6.41e-01 | 100.0% | 92.3% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.81 | 76.0 | 6.13e-01 | 100.0% | 87.9% |
| 3583154 | 220.3.1.0 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins | 0.78 | 72.0 | 6.94e-01 | 100.0% | 90.7% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.71 | 61.0 | 6.01e-01 | 100.0% | 87.9% |
| 2464208 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.65 | 59.0 | 5.44e-01 | 100.0% | 95.6% |
| 5050550 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 36.0 | 3.75e-01 | 72.0% | 58.3% |
| 3478357 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 34.0 | 3.31e-01 | 96.0% | 51.1% |
| 3857127 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 30.0 | 3.48e-01 | 95.2% | 68.2% |
| 3411669 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 3.49e-01 | 80.0% | 61.8% |
| 3909420 | 11.1.1.129 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind | 0.57 | 29.0 | 3.27e-01 | 83.2% | 61.1% |
| 5074083 | 11.1.1.91 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Spo0M | 0.53 | 33.0 | 3.17e-01 | 70.4% | 53.1% |
| 184963 | 11.1.1.347 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › T26-6p_Ig-like_dom_2 | 0.52 | 32.0 | 2.97e-01 | 82.4% | 44.9% |
| 3509590 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.50 | 32.0 | 2.93e-01 | 81.6% | 50.0% |
D2
high
residues 368-469
Domain cluster:
rep: glycoprotein__YP_009666281__Drosophila_unispina_virus_1__1802951__D393-466
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gumB01 | 2.30.30.1230 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 59.0 | 6.02e-01 | 97.1% | 92.0% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.54 | 25.0 | 3.33e-01 | 74.5% | 89.1% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 44.0 | 3.24e-01 | 95.1% | 99.0% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.50 | 35.0 | 2.99e-01 | 72.5% | 76.7% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 44.0 | 3.12e-01 | 96.1% | 97.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2488247 | 4300.1.1.1 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B | 0.66 | 54.0 | 4.42e-01 | 97.1% | 48.1% |
| 3687323 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 29.0 | 3.55e-01 | 72.5% | 70.8% |
| 3490907 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 46.0 | 3.18e-01 | 97.1% | 90.4% |
| 3940760 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 44.0 | 3.18e-01 | 97.1% | 98.7% |
| 3251132 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 44.0 | 3.05e-01 | 98.0% | 91.8% |
D3
medium
residues 29-71_204-260_336-367
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gumB03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.62 | 47.0 | 4.99e-01 | 78.0% | 100.0% |