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putative_glycoprotein

Euk-Vir

Hubei_rhabdo-like_virus_7

putative_glycoprotein__YP_009337120__Hubei_rhabdo-like_virus_7__1923191

Identity

Accession:
YP_009337120 ↗
Protein ID:
putative_glycoprotein
Kingdom:
euk

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-223
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 43.4 1.80e-11 100.0% 22.5%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 31.0 3.51e-01 70.2% 62.3%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 29.0 3.29e-01 97.4% 57.5%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 28.0 3.34e-01 73.5% 60.2%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.56 25.0 3.59e-01 96.7% 96.7%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 27.0 3.12e-01 96.7% 59.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.52 28.0 2.96e-01 78.1% 56.6%
7k7jA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.29e-01 96.0% 72.2%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.52 28.0 2.68e-01 93.4% 42.5%
7zubC01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 34.0 3.65e-01 96.0% 77.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411669 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 34.0 4.00e-01 94.0% 62.7%
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.69 53.0 5.62e-01 100.0% 91.7%
3397257 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.67 32.0 3.62e-01 94.0% 59.1%
3408652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 33.0 3.23e-01 70.2% 42.5%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.63 59.0 5.80e-01 100.0% 96.9%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.63 58.0 5.78e-01 100.0% 97.5%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.63 59.0 5.77e-01 100.0% 96.9%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.62 57.0 5.66e-01 100.0% 97.5%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.61 56.0 4.88e-01 98.0% 87.4%
3608272 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.60 36.0 4.08e-01 70.2% 77.4%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.60 55.0 4.93e-01 100.0% 93.3%
3491662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 29.0 3.73e-01 95.4% 87.8%
3591445 11.1.1.830 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CFAP65_8th 0.57 29.0 3.19e-01 94.7% 56.8%
4033291 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.57 40.0 3.90e-01 72.8% 99.4%
3520045 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.55 34.0 3.39e-01 96.7% 59.4%
D2 high residues 240-338
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 34.1 1.10e-08 100.0% 14.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 24.0 3.32e-01 86.9% 84.8%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 3.36e-01 98.0% 62.1%
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 31.0 3.44e-01 97.0% 75.0%
2napA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 29.0 3.57e-01 98.0% 96.6%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.50 29.0 3.46e-01 96.0% 93.1%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.02e-01 70.7% 77.0%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.50 29.0 3.51e-01 97.0% 98.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083897 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.56 35.0 3.58e-01 97.0% 64.3%
3448806 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 32.0 3.94e-01 90.9% 96.7%
3170444 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.53 36.0 2.95e-01 71.7% 94.5%
3673793 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.52 32.0 3.78e-01 89.9% 96.8%
D3 medium residues 27-41_395-475
PDB
Domain cluster: rep: glycoprotein__YP_009666281__Drosophila_unispina_virus_1__1802951__D393-466
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 65.5 3.60e-18 82.3% 10.4%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 31.0 3.65e-01 72.9% 77.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 33.0 3.92e-01 75.0% 93.5%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.97e-01 71.9% 100.0%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 42.0 3.44e-01 91.7% 80.3%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 28.0 3.03e-01 72.9% 61.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488247 4300.1.1.1 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B 0.68 60.0 4.90e-01 100.0% 95.7%
3585447 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 32.0 3.48e-01 74.0% 68.8%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 31.0 3.29e-01 74.0% 64.0%
3405815 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 27.0 3.41e-01 71.9% 94.0%
D4 medium residues 42-60_350-394
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dbgA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 55.0 3.41e-01 100.0% 73.4%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 3.41e-01 100.0% 49.4%
3l7yA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.58 36.0 3.05e-01 100.0% 35.8%
1n97A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 46.0 2.93e-01 93.8% 69.6%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 39.0 3.42e-01 71.9% 63.8%
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 44.0 2.76e-01 92.2% 68.2%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 2.85e-01 84.4% 34.2%
3vgpA00 3.40.50.12610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.39e-01 98.4% 79.1%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.62e-01 100.0% 66.7%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 42.0 2.88e-01 92.2% 60.2%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 40.0 2.50e-01 89.1% 69.2%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 34.0 2.92e-01 70.3% 72.6%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.50 39.0 3.04e-01 82.8% 86.0%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.66e-01 87.5% 75.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3344177 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.67 42.0 4.77e-01 100.0% 88.9%
3171118 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.57 39.0 2.74e-01 71.9% 82.3%
3219435 243.1.1.75 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.54 39.0 2.82e-01 78.1% 44.8%
5050348 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 35.0 2.75e-01 70.3% 64.4%
3998151 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.52 38.0 3.56e-01 76.6% 96.2%
4968960 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 42.0 2.85e-01 87.5% 77.0%
5027879 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.51 39.0 3.72e-01 100.0% 69.3%
3856159 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.50 38.0 2.17e-01 92.2% 8.1%