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putative_glycoprotein

Euk-Vir

Hubei_dimarhabdovirus_virus_1

putative_glycoprotein__YP_009337215__Hubei_dimarhabdovirus_virus_1__1922866

Identity

Accession:
YP_009337215 ↗
Protein ID:
putative_glycoprotein
Kingdom:
euk

Quality

65.4 mean pLDDT

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-51_293-454
PDB
D2 high residues 59-72_201-280
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.80 68.0 6.86e-01 100.0% 90.5%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.73 62.0 6.26e-01 100.0% 91.4%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.64 56.0 4.74e-01 100.0% 73.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.34e-01 97.9% 97.3%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 56.0 5.04e-01 100.0% 93.8%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 50.0 4.60e-01 87.2% 91.7%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 5.27e-01 100.0% 96.3%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 5.37e-01 98.9% 96.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 56.0 5.20e-01 100.0% 86.3%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 47.0 3.72e-01 84.0% 98.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 5.19e-01 95.7% 92.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 54.0 5.06e-01 100.0% 87.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.62e-01 100.0% 97.1%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 5.03e-01 98.9% 97.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.81e-01 100.0% 79.4%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.97e-01 100.0% 82.6%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.46e-01 100.0% 68.5%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.57 36.0 4.11e-01 88.3% 90.8%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.20e-01 97.9% 96.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.39e-01 100.0% 76.1%
4ihzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.69e-01 85.1% 98.8%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.89e-01 89.4% 91.5%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 4.28e-01 84.0% 95.6%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 37.0 3.46e-01 88.3% 55.1%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.78e-01 89.4% 91.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 43.0 3.28e-01 89.4% 85.1%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.53 33.0 3.42e-01 95.7% 67.4%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 39.0 4.07e-01 80.9% 100.0%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.69e-01 89.4% 92.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 31.0 3.27e-01 90.4% 69.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 55.0 5.87e-01 96.8% 91.3%
5007103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 53.0 5.67e-01 98.9% 95.0%
3742568 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.64 56.0 4.47e-01 100.0% 87.5%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.64 31.0 3.88e-01 87.2% 76.4%
3700528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 57.0 5.21e-01 100.0% 84.8%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 56.0 5.44e-01 100.0% 94.3%
3940673 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 56.0 5.13e-01 100.0% 95.2%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 51.0 4.82e-01 100.0% 74.8%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.61 54.0 4.90e-01 100.0% 82.3%
3648024 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.61 54.0 4.93e-01 100.0% 86.4%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 53.0 4.60e-01 100.0% 74.7%
3370724 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.59e-01 88.3% 75.7%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 53.0 5.00e-01 100.0% 98.3%
3690989 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.29e-01 100.0% 91.7%
3790351 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.59 52.0 4.86e-01 100.0% 93.3%
3579992 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 4.48e-01 100.0% 68.4%
3587863 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.59 36.0 3.84e-01 86.2% 69.4%
3705440 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.58 51.0 3.69e-01 98.9% 50.5%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 5.00e-01 98.9% 92.4%
3592970 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 51.0 3.63e-01 98.9% 48.3%
3567875 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 51.0 4.32e-01 100.0% 58.1%
3779393 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 51.0 4.59e-01 100.0% 71.5%
3893746 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 51.0 4.46e-01 100.0% 66.4%
3594682 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 50.0 3.59e-01 100.0% 48.5%
4962251 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.57 49.0 4.45e-01 100.0% 80.7%
1680295 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.56 50.0 3.64e-01 98.9% 59.0%
4199183 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 44.0 3.83e-01 86.2% 96.6%
3936608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.58e-01 97.9% 90.0%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.54 41.0 3.44e-01 88.3% 48.4%
3598250 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 48.0 3.53e-01 98.9% 45.5%
3481413 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 47.0 3.57e-01 98.9% 51.7%
3847699 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.54 47.0 3.41e-01 98.9% 42.4%
3249890 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.54 47.0 3.49e-01 98.9% 61.5%
3933337 109.4.1.2535 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Alpha_kinase 0.54 47.0 3.03e-01 98.9% 25.9%
3791476 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.54 47.0 3.46e-01 97.9% 46.9%
3575737 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 4.04e-01 96.8% 81.1%
3334322 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.53 37.0 4.10e-01 87.2% 92.0%
4208052 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.53 39.0 3.21e-01 77.7% 90.6%
3857291 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.52 46.0 3.39e-01 97.9% 47.8%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 36.0 3.39e-01 88.3% 56.7%
3717198 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 42.0 2.83e-01 91.5% 91.7%
3265885 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 41.0 3.67e-01 88.3% 68.6%
3931783 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.51 32.0 3.23e-01 89.4% 61.1%
3960510 3844.2.1.0 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone 0.50 43.0 3.19e-01 100.0% 75.4%
5062749 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.50 41.0 3.87e-01 88.3% 78.9%
D3 medium residues 84-193
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 76.9 2.40e-21 85.5% 90.8%