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putative_glycoprotein
Euk-VirXinzhou_dimarhabdovirus_virus_1
putative_glycoprotein__YP_009344981__Xinzhou_dimarhabdovirus_virus_1__1923768
Identity
- Accession:
- YP_009344981 ↗
- Protein ID:
- putative_glycoprotein
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-192
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 81.9 | 6.50e-23 | 85.5% | 98.0% |
CATH (2)
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.89 | 83.0 | 8.13e-01 | 100.0% | 91.7% |
| 2124201 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.61 | 55.0 | 5.10e-01 | 100.0% | 98.1% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 26.0 | 3.48e-01 | 100.0% | 80.0% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.58 | 28.0 | 3.67e-01 | 100.0% | 86.2% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 26.0 | 2.87e-01 | 100.0% | 52.5% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 25.0 | 3.39e-01 | 100.0% | 82.8% |
| 3846579 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.53 | 36.0 | 3.23e-01 | 71.8% | 50.6% |
| 3842370 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.52 | 40.0 | 3.54e-01 | 79.8% | 100.0% |
| 3216873 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.52 | 28.0 | 2.80e-01 | 91.1% | 50.8% |
| 3280008 | 3115.1.1.2 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 | 0.51 | 34.0 | 3.94e-01 | 91.9% | 93.3% |
| 3214023 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.51 | 28.0 | 2.89e-01 | 91.9% | 54.4% |
| 3410016 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.51 | 33.0 | 2.98e-01 | 70.2% | 47.6% |
| 3967141 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.50 | 46.0 | 3.54e-01 | 100.0% | 83.3% |
D2
medium
residues 20-45_317-401
Domain cluster:
rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.80 | 62.0 | 6.78e-01 | 97.3% | 97.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3324097 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.53 | 32.0 | 3.63e-01 | 85.6% | 80.0% |
| 3190386 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.51 | 41.0 | 3.28e-01 | 87.4% | 90.6% |