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putative_glycoprotein

Euk-Vir

Pteromalus_puparum_negative-strand_RNA_virus_1

putative_glycoprotein__YP_009505432__Pteromalus_puparum_negative-strand_RNA_virus_1__1926633

Identity

Accession:: YP_009505432 ↗
Protein ID:: putative_glycoprotein
Kingdom:: euk

Quality

70.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Artoviridae› Peropuvirus› Pteromalus_puparum_negative-strand_RNA_virus_1

TaxID: 1926633

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-205

PDB

D2 medium residues 16-31_364-436

PDB

Domain cluster: rep: glycoprotein__YP_009666281__Drosophila_unispina_virus_1__1802951__D393-466

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24664.2 best	Monjiviricetes_fusion	46.4	2.10e-12	82.0%	9.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ytyA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.56	31.0	3.15e-01	83.1%	52.3%
2cqoA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.52	31.0	3.16e-01	85.4%	56.5%
4hwmA00	2.40.128.500	Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein	0.52	38.0	3.51e-01	77.5%	100.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3597690	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	36.0	4.00e-01	82.0%	74.3%
5049906	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.60	31.0	3.67e-01	89.9%	71.7%

D3 medium residues 32-52_279-363

PDB

Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D36-54_319-398

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gumA02	1.20.5.1890	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.81	64.0	6.57e-01	100.0%	87.1%
3fvcA02	1.20.5.1890	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.75	60.0	6.24e-01	100.0%	90.0%
3hlzA02	1.20.120.1090	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.56	27.0	2.50e-01	89.6%	37.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4314535	150.5.1.64 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF5344	0.73	51.0	5.78e-01	74.5%	95.0%
3931130	4300.1.1.0 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like	0.65	40.0	3.54e-01	100.0%	42.7%
3344177	387.1.5.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like	0.64	26.0	3.69e-01	100.0%	84.4%
5019252	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.63	57.0	3.62e-01	100.0%	55.5%
4963974	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.62	56.0	3.94e-01	100.0%	68.4%
5014331	2004.1.1.293 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15	0.57	52.0	3.12e-01	100.0%	72.2%
4991900	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.56	50.0	3.35e-01	95.3%	56.4%
5029795	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.54	49.0	3.35e-01	100.0%	50.0%
4960764	5073.1.1.11 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C	0.50	46.0	3.06e-01	100.0%	55.3%

D4 medium residues 53-65_210-278

PDB

Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D55-73_241-318

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gumB03	2.30.29.100	Mainly Beta › Roll › PH-domain like ›	0.74	63.0	5.47e-01	91.5%	83.5%
1eg3A01	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.68	27.0	3.82e-01	79.3%	73.7%
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.62	47.0	4.52e-01	91.5%	70.5%
2ysiA01	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.61	26.0	3.76e-01	100.0%	93.9%
3wa1A01	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.57	47.0	3.89e-01	93.9%	96.9%
7u32F02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.57	34.0	3.89e-01	91.5%	92.2%
6lf2B01	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.57	47.0	4.15e-01	92.7%	96.0%
1b7tA02	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.56	32.0	3.71e-01	93.9%	84.6%
4m4zA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.56	32.0	3.87e-01	90.2%	95.7%
2af5A01	2.40.128.160	Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like)	0.55	31.0	3.63e-01	81.7%	83.3%
4rs6A01	3.30.1120.30	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain	0.54	38.0	3.33e-01	72.0%	80.5%
6my0A02	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.54	35.0	3.85e-01	95.1%	84.6%
2lccA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.53	35.0	3.69e-01	96.3%	75.0%
3ottB02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	40.0	2.69e-01	81.7%	21.8%
3le4A00	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.52	31.0	3.68e-01	79.3%	89.1%
2i2lA01	2.10.70.50	Mainly Beta › Ribbon › Complement Module; domain 1 ›	0.52	31.0	3.72e-01	87.8%	92.3%
5fpwA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.50	42.0	2.87e-01	91.5%	89.0%
1xkgA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.50	42.0	2.88e-01	93.9%	26.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5017637	4.1.1.458 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2098	0.69	36.0	4.23e-01	92.7%	72.7%
4957888	4.1.1.458 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2098	0.66	36.0	4.07e-01	93.9%	71.7%
3874056	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.65	39.0	4.61e-01	89.0%	89.1%
4974669	4.1.1.458 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2098	0.64	40.0	3.89e-01	100.0%	56.7%
3749834	64.1.1.0 ↗	beta meanders › WW domain-like › WW domain › WW domain	0.60	37.0	4.41e-01	92.7%	92.7%
None	—		0.57	46.0	3.14e-01	87.8%	85.9%
4448672	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.54	43.0	2.91e-01	86.6%	85.4%
None	—		0.53	44.0	3.05e-01	90.2%	89.8%
3989970	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	34.0	3.70e-01	92.7%	81.5%
4927080	331.3.1.11 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2	0.50	40.0	3.43e-01	89.0%	95.0%