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putative_glycoprotein

Euk-Vir

Bolahun_virus_variant_2

putative_glycoprotein__YP_010084244__Bolahun_virus_variant_2__1903560

Identity

Accession:
YP_010084244 ↗
Protein ID:
putative_glycoprotein
Kingdom:
euk

Quality

74.6 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-64_224-305
PDB
Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D55-73_241-318
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 30.7 1.20e-07 89.6% 9.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 54.0 4.77e-01 85.4% 68.5%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 54.0 4.78e-01 85.4% 61.1%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 52.0 4.65e-01 85.4% 62.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 5.04e-01 84.4% 84.6%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.44e-01 84.4% 95.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 4.49e-01 81.2% 75.7%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 46.0 4.26e-01 81.2% 100.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.61 48.0 4.42e-01 85.4% 75.8%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.26e-01 85.4% 70.1%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.60 46.0 3.87e-01 82.3% 98.2%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.60 47.0 4.24e-01 86.5% 70.6%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 45.0 3.96e-01 81.2% 96.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.23e-01 85.4% 77.1%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.59 42.0 4.54e-01 94.8% 89.9%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 45.0 3.77e-01 82.3% 98.2%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 4.06e-01 81.2% 92.9%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 3.92e-01 85.4% 83.6%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 45.0 4.01e-01 85.4% 70.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.57 43.0 4.28e-01 82.3% 99.0%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 34.0 3.35e-01 83.3% 53.5%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 44.0 3.86e-01 82.3% 91.5%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 4.03e-01 92.7% 84.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 44.0 4.31e-01 84.4% 83.7%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 4.05e-01 92.7% 92.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 43.0 4.07e-01 86.5% 94.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.80e-01 85.4% 81.3%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.54 43.0 3.91e-01 86.5% 100.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.09e-01 83.3% 86.7%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 34.0 2.69e-01 83.3% 31.4%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.98e-01 84.4% 99.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 55.0 5.33e-01 84.4% 88.2%
3519897 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 55.0 5.00e-01 85.4% 76.2%
3547482 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 55.0 4.55e-01 85.4% 57.6%
3491283 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.59e-01 85.4% 69.1%
3474366 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.83e-01 85.4% 72.1%
3471287 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 4.58e-01 85.4% 69.1%
3497957 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.56e-01 85.4% 60.0%
3564452 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 3.10e-01 85.4% 10.0%
4323150 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.76e-01 85.4% 71.5%
3741856 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.87e-01 85.4% 69.6%
3236855 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.69e-01 85.4% 64.7%
3828854 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 4.85e-01 85.4% 70.4%
3482605 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 5.19e-01 85.4% 91.8%
3923150 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.68 54.0 4.95e-01 85.4% 81.6%
3673362 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.68 54.0 4.60e-01 86.5% 71.9%
3267845 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.68 53.0 5.06e-01 85.4% 76.5%
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 54.0 5.01e-01 85.4% 84.2%
3493320 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.67 53.0 4.74e-01 85.4% 65.2%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.67 53.0 5.25e-01 85.4% 86.0%
3413910 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.67 52.0 4.72e-01 85.4% 66.7%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 4.98e-01 85.4% 74.8%
3257304 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 52.0 5.12e-01 85.4% 82.9%
3884716 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 52.0 4.69e-01 85.4% 65.2%
3899275 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 52.0 4.66e-01 85.4% 67.4%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.66 52.0 3.90e-01 85.4% 38.0%
3924744 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 51.0 4.57e-01 85.4% 65.0%
3743741 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.65 47.0 5.00e-01 83.3% 85.9%
3925291 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.65 51.0 4.68e-01 85.4% 73.8%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.84e-01 86.5% 71.7%
3166727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 4.42e-01 84.4% 72.4%
3995389 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.64 50.0 4.40e-01 85.4% 64.8%
3652880 220.1.1.172 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.64 50.0 4.52e-01 85.4% 83.0%
3522591 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.63 55.0 3.87e-01 95.8% 68.3%
3458058 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.63 49.0 4.51e-01 83.3% 69.6%
5033672 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 48.0 3.89e-01 83.3% 55.9%
3932526 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 49.0 4.43e-01 85.4% 68.1%
3171382 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.62 48.0 5.01e-01 83.3% 93.3%
3785249 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.62 48.0 4.67e-01 85.4% 79.1%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.62 47.0 4.71e-01 81.2% 86.0%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.61 48.0 4.53e-01 85.4% 73.3%
3933227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 4.54e-01 85.4% 78.3%
3931349 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.61 48.0 4.34e-01 87.5% 70.5%
3338200 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.61 43.0 3.64e-01 78.1% 45.2%
3782145 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.60 47.0 4.74e-01 83.3% 87.4%
3414887 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 53.0 3.88e-01 100.0% 81.8%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.59 45.0 4.46e-01 84.4% 84.8%
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.58 44.0 3.90e-01 81.2% 99.3%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.58 46.0 4.33e-01 87.5% 96.7%
3991461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 4.34e-01 78.1% 100.0%
3597380 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.27e-01 86.5% 100.0%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.15e-01 85.4% 90.0%
3591170 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 44.0 4.11e-01 85.4% 95.0%
3094739 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 46.0 4.09e-01 91.7% 84.3%
3609858 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 43.0 4.17e-01 83.3% 84.8%
3491413 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.55 43.0 3.15e-01 84.4% 31.4%
3593275 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.11e-01 85.4% 99.1%
3894256 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 45.0 3.83e-01 93.8% 80.6%
4626423 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 39.0 2.69e-01 79.2% 100.0%
4891197 3794.1.1.7 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › Biotin_lipoyl 0.52 39.0 3.73e-01 94.8% 68.1%
D2 high residues 67-215
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 39.2 3.30e-10 100.0% 22.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 36.0 4.43e-01 93.3% 92.6%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 26.0 3.16e-01 96.0% 67.0%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 40.0 3.74e-01 75.2% 96.3%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 25.0 2.84e-01 85.2% 54.6%
1nezH00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.30e-01 94.0% 67.5%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.50 25.0 2.64e-01 94.6% 50.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925634 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.69 34.0 4.71e-01 71.1% 98.6%
4950854 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 28.0 3.51e-01 70.5% 64.4%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.64 60.0 5.85e-01 100.0% 96.9%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.64 60.0 5.84e-01 100.0% 96.9%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.64 59.0 5.82e-01 100.0% 97.5%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.62 57.0 5.65e-01 100.0% 97.5%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.60 54.0 4.72e-01 97.3% 87.0%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.59 54.0 4.83e-01 100.0% 93.3%
5035593 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 27.0 3.13e-01 72.5% 58.1%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 26.0 3.58e-01 97.3% 93.8%
3256250 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 34.0 3.47e-01 95.3% 60.0%
3446425 11.1.1.558 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 0.54 39.0 4.35e-01 74.5% 91.7%
3276129 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.54 33.0 3.98e-01 96.6% 97.8%
3251650 10.2.1.84 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin 0.52 30.0 2.98e-01 79.2% 52.3%
3306922 11.1.1.60 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.51 34.0 3.25e-01 96.6% 57.6%
3965794 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 32.0 3.96e-01 99.3% 100.0%
3517524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 26.0 3.10e-01 94.6% 72.6%
D3 medium residues 364-457
PDB
Domain cluster: rep: glycoprotein__YP_010085028__Wuhan_sharpbelly_bornavirus__2116489__D17-38_270-380
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 92.5 2.30e-26 100.0% 13.8%