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putative_gp013-like_protein

Euk-Vir

Esparto_virus

putative_gp013-like_protein__YP_009551768__Esparto_virus__2072209

Identity

Accession:
YP_009551768 ↗
Protein ID:
putative_gp013-like_protein
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Esparto_virus

TaxID: 2072209

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-108
PDB
Domain cluster: rep: MH268168.1__AWY10457.1__PFP1_07__00007__D2-95
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.66 33.0 2.83e-01 93.7% 30.5%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 47.0 3.57e-01 80.0% 65.8%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 33.0 3.92e-01 96.8% 78.1%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 33.0 3.17e-01 93.7% 45.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 32.0 3.85e-01 96.8% 86.0%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 33.0 3.28e-01 84.2% 51.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 32.0 3.65e-01 96.8% 76.9%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 35.0 2.96e-01 97.9% 40.5%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 38.0 3.66e-01 100.0% 63.7%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 35.0 3.04e-01 97.9% 43.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.53 33.0 3.40e-01 88.4% 64.8%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 30.0 3.67e-01 88.4% 100.0%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.90e-01 76.8% 100.0%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 3.13e-01 95.8% 47.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.51 29.0 3.31e-01 81.1% 76.1%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.04e-01 95.8% 46.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 33.0 3.25e-01 95.8% 61.2%
2afsA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 44.0 3.10e-01 98.9% 68.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1790169 101.1.9.7 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Baculo_PEP_N 0.83 70.0 6.77e-01 100.0% 80.2%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.82 67.0 6.36e-01 100.0% 74.5%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.80 64.0 6.22e-01 100.0% 77.1%
3484671 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.73 33.0 4.37e-01 95.8% 80.0%
3586665 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 33.0 4.12e-01 83.2% 81.8%
4028521 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.64 44.0 4.29e-01 76.8% 63.8%
4931409 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 36.0 3.19e-01 80.0% 40.0%
3456692 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 35.0 4.38e-01 71.6% 93.2%
5005640 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.59 33.0 3.85e-01 96.8% 78.5%
3250857 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 37.0 3.78e-01 91.6% 65.6%
4971399 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 38.0 3.61e-01 91.6% 56.4%
4965879 881.1.1.44 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.57 43.0 3.50e-01 80.0% 86.5%
3909234 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 35.0 3.32e-01 98.9% 51.3%
4998648 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.56 32.0 3.30e-01 89.5% 55.8%
5072187 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.55 42.0 2.76e-01 82.1% 90.2%
4524698 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 33.0 3.90e-01 96.8% 89.2%
4982570 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 35.0 3.96e-01 96.8% 87.1%
4949036 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.54 30.0 3.80e-01 85.3% 100.0%
5076192 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.54 33.0 3.66e-01 96.8% 78.4%
5050898 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.54 34.0 3.83e-01 95.8% 85.7%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 29.0 3.29e-01 93.7% 70.0%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 31.0 3.79e-01 89.5% 98.2%
3622620 11.1.1.959 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ILCR1_N 0.53 40.0 3.24e-01 78.9% 65.3%
4935912 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.51 32.0 3.56e-01 95.8% 82.9%
5000724 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.66e-01 94.7% 73.7%
5001733 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 38.0 3.33e-01 80.0% 89.7%
4929236 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.50 32.0 3.63e-01 95.8% 87.1%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.50 29.0 3.44e-01 88.4% 88.3%
5076310 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.50 38.0 3.19e-01 93.7% 48.4%
3602156 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 34.0 2.89e-01 98.9% 41.2%