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putative_gp106-like_protein

Euk-Vir

Esparto_virus

putative_gp106-like_protein__YP_009551721__Esparto_virus__2072209

Identity

Accession:
YP_009551721 ↗
Protein ID:
putative_gp106-like_protein
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Esparto_virus

TaxID: 2072209

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.77 59.0 4.46e-01 83.9% 67.9%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.71 54.0 4.02e-01 83.9% 68.9%
3shgB00 1.10.8.1050 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Antitoxin VbhA-like 0.67 51.0 5.04e-01 83.9% 83.6%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 48.0 4.05e-01 76.8% 48.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 51.0 4.11e-01 85.7% 42.0%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.66 49.0 4.33e-01 82.1% 58.8%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 52.0 4.68e-01 89.3% 88.6%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.04e-01 75.0% 19.8%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 48.0 4.32e-01 83.9% 85.5%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.64 44.0 4.22e-01 73.2% 64.7%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 4.30e-01 87.5% 62.7%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 54.0 3.58e-01 100.0% 40.3%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 42.0 3.98e-01 73.2% 62.7%
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 50.0 4.58e-01 94.6% 84.0%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.59 40.0 3.82e-01 71.4% 70.1%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.57 38.0 3.97e-01 71.4% 79.2%
1enwA00 1.10.472.30 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Transcription elongation factor S-II, central domain 0.56 47.0 3.88e-01 100.0% 64.9%
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 3.38e-01 96.4% 54.3%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.51 43.0 3.14e-01 92.9% 63.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3120 163.1.1.1 ↗ alpha arrays › Fertilization protein › Fertilization protein › Fertilization protein › Egg_lysin 0.77 59.0 4.46e-01 83.9% 67.9%
3608317 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 59.0 5.27e-01 83.9% 87.5%
4028395 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.77 59.0 4.74e-01 82.1% 43.8%
3966542 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.73 55.0 3.52e-01 82.1% 38.8%
154834 592.4.1.1 ↗ alpha arrays › PWI domain-like › Repetitive domains of egg case silk protein TuSp1 › Repetitive domains of egg case silk protein TuSp1 › RP1-2 0.70 55.0 3.95e-01 87.5% 40.7%
5049138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 54.0 4.05e-01 85.7% 60.7%
4985638 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 48.0 3.29e-01 82.1% 25.6%
4032825 7523.1.1.22 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 0.64 49.0 3.72e-01 83.9% 49.6%
4947167 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 53.0 4.00e-01 98.2% 60.0%
4944741 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 3.71e-01 85.7% 60.0%
3939833 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.64 55.0 4.52e-01 94.6% 89.0%
5072566 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.62 45.0 4.28e-01 78.6% 71.4%
3997762 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 49.0 3.17e-01 91.1% 27.8%
3313973 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.57 49.0 4.11e-01 98.2% 80.0%
4232615 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.55 43.0 3.34e-01 89.3% 41.7%
D2 medium residues 57-106
PDB