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putative_helicase-primase_primase_subunit

Euk-Vir

Cyprinid_herpesvirus_1

putative_helicase-primase_primase_subunit__YP_007003712__Cyprinid_herpesvirus_1__317858

Identity

Accession:
YP_007003712 ↗
Protein ID:
putative_helicase-primase_primase_subunit
Kingdom:
euk

Quality

53.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_1

TaxID: 317858

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-95
PDB
D2 high residues 122-215
PDB
D3 high residues 355-465
PDB
D4 high residues 473-576_631-687
PDB
Domain cluster: rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
D5 high residues 724-812
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.60 40.0 4.39e-01 86.5% 87.1%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 47.0 3.41e-01 88.8% 78.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 41.0 3.94e-01 74.2% 85.3%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 44.0 3.19e-01 84.3% 47.2%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 48.0 4.24e-01 94.4% 81.4%
2glxA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 48.0 3.65e-01 95.5% 61.6%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.44e-01 77.5% 91.9%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 45.0 4.02e-01 89.9% 76.8%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 37.0 2.97e-01 71.9% 58.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 3.25e-01 100.0% 45.1%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.53 47.0 4.06e-01 100.0% 66.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 44.0 4.20e-01 100.0% 78.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.59e-01 97.8% 60.5%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 47.0 4.02e-01 98.9% 68.3%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 44.0 3.81e-01 98.9% 81.9%
6f35A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 46.0 3.72e-01 100.0% 56.1%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.31e-01 97.8% 82.5%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.85e-01 94.4% 86.5%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 44.0 3.26e-01 100.0% 80.9%
4opmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 2.83e-01 87.6% 89.0%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.50 38.0 3.95e-01 98.9% 88.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028370 9.1.1.40 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Herpes_UL52 0.74 60.0 4.93e-01 87.6% 100.0%
3596657 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 62.0 6.22e-01 93.3% 98.9%
4088510 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.65 55.0 3.91e-01 93.3% 83.7%
4998670 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 53.0 5.29e-01 94.4% 87.8%
5010025 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 51.0 4.67e-01 91.0% 92.5%
4013354 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 54.0 3.70e-01 98.9% 84.8%
5023704 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 43.0 3.64e-01 76.4% 61.4%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 51.0 4.78e-01 97.8% 79.1%
3990814 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.56 41.0 2.71e-01 76.4% 26.6%
3829961 243.3.1.26 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.56 43.0 3.48e-01 82.0% 77.6%
5081432 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 40.0 3.26e-01 76.4% 45.3%
3476117 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 47.0 4.40e-01 97.8% 90.4%
3438388 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.54 45.0 3.94e-01 94.4% 60.0%
3717699 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 38.0 2.83e-01 71.9% 41.7%
3603029 873.1.1.11 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27343 0.54 38.0 3.35e-01 86.5% 48.1%
5021605 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.54 38.0 3.10e-01 71.9% 90.3%
4971611 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 47.0 3.79e-01 100.0% 80.5%
3966647 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.54 43.0 4.22e-01 85.4% 86.3%
5036266 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.53 40.0 2.73e-01 80.9% 44.4%
3442241 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 45.0 3.16e-01 100.0% 54.6%
4029521 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 39.0 3.13e-01 80.9% 69.1%
3472673 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.04e-01 70.8% 59.3%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 37.0 3.74e-01 76.4% 87.8%
4538358 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 36.0 3.29e-01 94.4% 56.5%
3754362 3426.1.1.0 ↗ beta meanders › Telethonin › Telethonin › Telethonin 0.51 32.0 3.74e-01 100.0% 95.0%
3894031 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.50 36.0 3.66e-01 96.6% 77.6%
4341729 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.50 36.0 2.76e-01 76.4% 66.4%
D6 medium residues 577-630
PDB