←Back to structures

putative_helicase-primase_primase_subunit

Euk-Vir

Cyprinid_herpesvirus_2

putative_helicase-primase_primase_subunit__YP_007003867__Cyprinid_herpesvirus_2__317878

Identity

Accession:
YP_007003867 ↗
Protein ID:
putative_helicase-primase_primase_subunit
Kingdom:
euk

Quality

52.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_2

TaxID: 317878

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-94
PDB
D2 high residues 134-222
PDB
D3 high residues 361-505
PDB
D4 high residues 756-872
PDB
D5 medium residues 507-608_699-738
PDB
D6 medium residues 609-631_656-698
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.64 51.0 3.77e-01 89.4% 40.2%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.51e-01 86.4% 92.6%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.60 45.0 4.70e-01 89.4% 96.5%
4i1eA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 45.0 3.46e-01 84.8% 96.4%
3wa2X02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.68e-01 77.3% 85.3%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.87e-01 83.3% 64.9%
6grrA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.52e-01 77.3% 84.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.23e-01 77.3% 100.0%
2prvA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.56 38.0 2.98e-01 72.7% 43.8%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.63e-01 80.3% 93.1%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.10e-01 97.0% 91.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 43.0 4.30e-01 89.4% 94.0%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.93e-01 98.5% 87.6%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.12e-01 86.4% 91.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.93e-01 83.3% 81.0%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.57e-01 80.3% 41.0%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.54 41.0 3.80e-01 83.3% 89.5%
2opiA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.54 45.0 3.29e-01 97.0% 68.3%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.74e-01 86.4% 97.4%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.90e-01 97.0% 85.2%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.32e-01 86.4% 99.3%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 33.0 3.41e-01 90.9% 64.6%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 37.0 2.90e-01 77.3% 73.6%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.00e-01 100.0% 95.0%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.92e-01 97.0% 84.0%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.52 37.0 3.56e-01 87.9% 66.2%
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.52 35.0 3.47e-01 86.4% 66.7%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.46e-01 77.3% 72.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.95e-01 84.8% 100.0%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.37e-01 80.3% 88.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.74e-01 97.0% 77.0%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.44e-01 78.8% 54.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 4.07e-01 98.5% 84.0%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.31e-01 92.4% 97.2%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 41.0 2.79e-01 95.5% 85.9%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.80e-01 98.5% 90.4%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 3.43e-01 89.4% 90.7%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.50 38.0 2.63e-01 86.4% 72.3%
3nbcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 39.0 3.16e-01 90.9% 98.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017256 10.32.1.33 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.65 51.0 3.61e-01 89.4% 32.9%
4319886 10.32.1.33 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.64 50.0 3.67e-01 89.4% 38.1%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.60e-01 87.9% 90.9%
3445096 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.61 45.0 2.81e-01 80.3% 34.0%
3252839 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.56e-01 90.9% 92.0%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.68e-01 86.4% 98.3%
4203592 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.36e-01 84.8% 84.6%
1550955 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.57 45.0 3.90e-01 89.4% 54.2%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 45.0 4.16e-01 89.4% 67.8%
3806796 5.1.4.91 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 0.57 47.0 2.91e-01 95.5% 81.5%
3579591 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 41.0 4.36e-01 86.4% 98.2%
3882794 5.1.3.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_ATRN-LZTR1 0.56 42.0 2.74e-01 81.8% 25.6%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.81e-01 87.9% 62.4%
3587337 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 44.0 3.51e-01 93.9% 40.7%
4559454 4.1.3.2 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › SHCBP_N 0.55 44.0 3.55e-01 92.4% 54.3%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.55 43.0 4.16e-01 95.5% 78.7%
3359029 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.55 42.0 2.79e-01 83.3% 82.2%
3551576 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.55 43.0 4.15e-01 87.9% 78.7%
3257607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.08e-01 89.4% 90.7%
4022384 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 45.0 2.97e-01 100.0% 71.9%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 39.0 2.85e-01 80.3% 76.1%
4941375 3772.1.1.0 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain 0.54 37.0 2.81e-01 72.7% 41.2%
3768346 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.53 40.0 3.89e-01 86.4% 74.7%
3214344 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 43.0 2.89e-01 98.5% 68.8%
3941161 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 43.0 2.90e-01 100.0% 83.3%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.95e-01 86.4% 84.6%
3601303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.82e-01 98.5% 73.7%
4304229 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.52 44.0 2.81e-01 98.5% 98.7%
3317030 4.1.1.366 ↗ beta barrels › SH3 › SH3 › SH3 › PF26738 0.52 39.0 4.08e-01 83.3% 93.3%
3905718 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 43.0 2.87e-01 98.5% 68.8%
4049822 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.52 45.0 2.80e-01 100.0% 99.3%
3215393 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.52 44.0 3.50e-01 100.0% 73.3%
3277495 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 42.0 2.80e-01 98.5% 90.4%
3887780 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 42.0 2.78e-01 98.5% 83.3%
3480402 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 2.89e-01 100.0% 87.5%
3914807 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.52 41.0 2.85e-01 100.0% 82.5%
3403385 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.52 41.0 2.79e-01 97.0% 86.2%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 40.0 3.71e-01 93.9% 65.6%
None — 0.51 43.0 2.85e-01 97.0% 74.2%
3175596 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 44.0 2.71e-01 100.0% 79.4%
3186869 5.1.3.165 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.51 42.0 2.80e-01 98.5% 87.4%
3241597 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 41.0 2.87e-01 100.0% 88.1%
3929445 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 38.0 2.60e-01 84.8% 49.5%
3213131 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 41.0 2.76e-01 95.5% 80.6%
3824503 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 41.0 2.87e-01 97.0% 44.6%
3783379 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 42.0 2.80e-01 100.0% 74.6%
3811973 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 41.0 2.78e-01 97.0% 86.6%
3754571 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.50 41.0 2.79e-01 97.0% 80.0%
3412592 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 38.0 2.54e-01 84.8% 92.9%
3491027 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 40.0 2.78e-01 97.0% 86.4%
4003000 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.50 37.0 2.85e-01 84.8% 79.3%