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putative_helicase

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

putative_helicase__YP_003986703__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:: YP_003986703 ↗
Protein ID:: putative_helicase
Kingdom:: euk

Quality

76.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 358-430

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08707.17 best	PriCT_2	58.2	1.20e-15	91.8%	84.4%

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.73	50.0	4.29e-01	71.2%	89.7%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.66	57.0	4.69e-01	100.0%	85.2%
3f0cA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.66	55.0	4.41e-01	93.2%	86.1%
2b0hA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.64	44.0	3.74e-01	74.0%	75.8%
2qvaA01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.63	51.0	4.33e-01	91.8%	88.4%
4c0eA01	1.25.40.790	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	48.0	3.31e-01	87.7%	29.0%
2zj2A04	1.10.3380.20	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.61	47.0	3.68e-01	84.9%	86.2%
2g7lA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.61	51.0	3.86e-01	97.3%	80.6%
1wy6A00	1.25.40.350	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	47.0	3.69e-01	86.3%	56.0%
3eyyA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.60	41.0	4.01e-01	72.6%	78.0%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	39.0	3.54e-01	74.0%	70.8%
3c1yA02	1.20.1260.110	Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region	0.56	49.0	3.93e-01	100.0%	75.7%
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	39.0	3.17e-01	74.0%	85.7%
2va8A03	1.10.3380.30	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.55	44.0	3.25e-01	93.2%	98.2%
4c2mA06	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.55	42.0	3.28e-01	82.2%	91.5%
4a17U01	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	37.0	3.71e-01	71.2%	89.6%
4o8sA02	1.20.58.1790	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain	0.55	41.0	3.75e-01	84.9%	77.6%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.54	37.0	3.20e-01	71.2%	69.4%
1w53A00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.54	46.0	4.44e-01	95.9%	96.4%
1o20A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.54	46.0	3.24e-01	100.0%	57.4%
3kwoA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	38.0	3.14e-01	78.1%	67.8%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	39.0	3.31e-01	80.8%	68.1%
2chpA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	38.0	3.15e-01	80.8%	91.2%
1s3qG00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	38.0	3.00e-01	79.5%	62.0%
4w8pA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	38.0	3.26e-01	82.2%	83.8%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3710221	197.1.1.7 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › PriCT_2	0.88	83.0	7.07e-01	100.0%	75.5%
3965738	182.1.1.1 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7	0.75	66.0	4.64e-01	100.0%	38.7%
4032867	601.1.1.11 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB	0.66	54.0	4.55e-01	95.9%	80.7%
3343724	2006.1.2.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases	0.65	54.0	3.93e-01	94.5%	36.8%
3997150	109.4.1.15 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS	0.65	51.0	4.24e-01	87.7%	60.0%
3817843	109.4.1.1258 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2	0.64	51.0	3.15e-01	87.7%	14.3%
4123065	191.1.1.49 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2	0.64	54.0	4.52e-01	98.6%	87.4%
4987950	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.61	47.0	4.00e-01	84.9%	64.0%
4927417	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.61	49.0	3.49e-01	90.4%	70.0%
3730942	109.4.1.1214 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPT	0.61	48.0	3.10e-01	89.0%	57.4%
3462423	109.4.1.218 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP	0.60	45.0	3.53e-01	83.6%	41.1%
4810647	109.47.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Helical C-terminal domain in magnesium chelatase catalytic subunit › Helical C-terminal domain in magnesium chelatase catalytic subunit › CobN-Mg_chel	0.59	40.0	3.96e-01	72.6%	95.0%
3194235	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	44.0	4.11e-01	84.9%	82.1%
3877212	109.4.1.483 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurobeachin	0.55	45.0	3.20e-01	94.5%	36.9%
4996068	109.4.1.210 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19	0.55	43.0	2.96e-01	87.7%	23.6%
4862896	109.4.1.192 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8	0.55	42.0	4.12e-01	83.6%	76.9%
3336125	603.1.1.99 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021	0.55	45.0	3.54e-01	95.9%	82.9%
3711742	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	39.0	3.50e-01	79.5%	91.3%
5075988	150.1.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin	0.53	42.0	3.26e-01	86.3%	88.7%
3942852	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.51	39.0	3.02e-01	84.9%	73.3%
4453815	192.12.1.1 ↗	alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › Prok-TraM	0.51	37.0	3.47e-01	79.5%	95.8%

D2 high residues 868-939

PDB

Domain cluster: rep: D5_family_NTPase_ATPase__YP_010084866__Shrimp_hemocyte_iridescent_virus__2039780__D809-878

D3 medium residues 55-129_236-307

PDB

D4 medium residues 431-638

PDB

Domain cluster: rep: VV_D5-like_helicase__YP_009000916__Pithovirus_sibericum__1450746__D372-558

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08706.17 best	D5_N	67.3	2.70e-18	80.8%	94.6%

D5 medium residues 639-698_770-867

PDB

Domain cluster: rep: IMGVR_UViG_3300009713_000223-3300009713-Ga0116163_10054584__D150-226_299-369

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u0jA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	56.0	5.11e-01	94.9%	89.3%
5x4kA01	3.90.1640.30	Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) ›	0.54	39.0	3.70e-01	74.1%	98.9%
3a00A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	32.0	4.03e-01	75.3%	100.0%
2xheA01	3.40.50.2060	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1	0.51	28.0	3.09e-01	94.3%	63.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3954608	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.87	84.0	6.87e-01	100.0%	80.4%
4973289	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.84	80.0	6.50e-01	98.1%	80.0%
4959586	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.82	80.0	6.35e-01	100.0%	76.3%
5022020	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.81	77.0	6.31e-01	100.0%	81.5%
5081314	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.79	76.0	6.25e-01	100.0%	80.4%
5003620	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.75	71.0	5.42e-01	100.0%	61.2%
3901287	2004.1.1.46 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM	0.56	46.0	3.88e-01	88.0%	90.0%
3724894	2006.1.2.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH	0.53	38.0	3.23e-01	72.2%	83.0%
3471078	2007.5.1.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase	0.52	42.0	3.59e-01	87.3%	99.6%
None	—		0.52	38.0	3.19e-01	75.9%	80.0%
3258073	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.52	43.0	3.57e-01	88.0%	87.8%
3256042	2004.1.1.21 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA	0.51	38.0	3.12e-01	75.9%	88.1%
5060175	2006.1.2.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases	0.51	37.0	3.17e-01	74.1%	93.3%
3733254	2004.1.1.294 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6	0.50	39.0	3.11e-01	81.6%	92.8%

D6 medium residues 699-769

PDB

Domain cluster: rep: putative_D5-ATPase-helicase__YP_009052397__Aureococcus_anophagefferens_virus__1474867__D656-678_692-719