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putative_helicase

Euk-Vir

Lausannevirus

putative_helicase__YP_004346969__Lausannevirus__999883

Identity

Accession:: YP_004346969 ↗
Protein ID:: putative_helicase
Kingdom:: euk

Quality

76.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Losannavirus› Lausannevirus

TaxID: 999883

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 186-348

PDB

Domain cluster: rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184

D2 high residues 369-456

PDB

D3 high residues 473-637

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	48.6	5.30e-13	96.4%	20.4%

D4 medium residues 22-54_997-1097

PDB

D5 medium residues 70-185_940-996

PDB

Domain cluster: rep: putative_helicase__YP_009238527__Brazilian_marseillevirus__1813599__D17-175_881-925

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dfeA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	25.0	3.51e-01	84.4%	87.8%
2if1A00	3.30.780.10	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain	0.53	27.0	3.15e-01	78.6%	65.1%
5zneA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	22.0	3.20e-01	72.8%	86.3%
1x7vA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	26.0	3.29e-01	74.6%	80.6%
2gffA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	26.0	3.25e-01	74.0%	81.2%
2vd3A03	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	22.0	3.20e-01	85.0%	91.9%
2oikA00	3.30.428.10	Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like	0.50	36.0	3.93e-01	85.5%	90.6%
4hl9A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	26.0	3.26e-01	74.6%	85.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5068310	305.1.1.0 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase	0.56	26.0	3.64e-01	72.8%	92.5%
3807592	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.56	23.0	3.32e-01	72.8%	85.7%
4927243	304.4.1.30 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3291	0.55	27.0	3.14e-01	74.0%	62.4%
4365813	306.2.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C	0.53	26.0	3.47e-01	80.3%	91.6%
3752343	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.53	20.0	3.17e-01	74.0%	98.2%
3232593	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	24.0	3.29e-01	73.4%	82.2%
3439358	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.51	27.0	3.08e-01	71.7%	67.2%
3463392	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.51	21.0	3.14e-01	72.8%	93.8%
4887048	304.5.1.0 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like	0.51	21.0	3.05e-01	86.1%	85.1%
3657793	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.51	21.0	3.07e-01	72.3%	92.3%
4254767	306.1.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB	0.50	28.0	3.60e-01	97.1%	100.0%

D6 medium residues 643-771

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase__YP_009010995__Chimpanzee_herpesvirus_strain_105640__332937__D268-285_303-382_532-556

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	35.0	6.60e-09	93.8%	13.2%

D7 medium residues 772-855

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jfcA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.60	33.0	3.92e-01	83.3%	80.4%
3e9lA02	1.20.80.40	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region	0.55	38.0	3.73e-01	72.6%	70.5%
3hhgE01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	45.0	4.46e-01	92.9%	94.3%
1o7dC01	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.53	36.0	4.10e-01	95.2%	96.7%
2iboA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	33.0	3.28e-01	72.6%	60.7%
2q5zB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.51	38.0	3.70e-01	88.1%	71.3%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.50	35.0	3.34e-01	97.6%	59.8%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3226564	5054.1.1.58 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C	0.60	50.0	3.39e-01	95.2%	82.6%
3484191	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.55	39.0	2.85e-01	75.0%	43.5%
3661482	4120.1.1.56 ↗	few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Myb_DNA-bind_3	0.55	40.0	4.13e-01	91.7%	83.7%
3709339	2484.1.1.62 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV	0.55	39.0	2.82e-01	75.0%	43.1%
4177030	3826.1.1.81 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › CKI	0.55	40.0	3.90e-01	95.2%	69.5%
3993742	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.54	46.0	4.01e-01	100.0%	60.7%
3236856	174.1.1.50 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807	0.54	46.0	3.73e-01	100.0%	48.0%
5042767	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	37.0	3.60e-01	76.2%	92.9%
3865098	4351.1.1.1 ↗	alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12	0.52	39.0	2.83e-01	79.8%	34.3%
4972154	604.12.1.135 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2	0.51	36.0	3.48e-01	100.0%	64.0%
3557551	212.1.1.24 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5	0.50	44.0	3.79e-01	95.2%	83.8%

D8 medium residues 856-939

PDB

Domain cluster: rep: conserved_putative_helicase__YP_009094625__Melbournevirus__1560514__D838-914

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nbiA01	1.10.8.1020	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain	0.62	31.0	3.68e-01	81.0%	69.0%
6tmfI00	1.10.455.10	Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5	0.56	43.0	3.25e-01	84.5%	66.4%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.55	39.0	4.06e-01	90.5%	78.5%
7b7tA01	1.20.1270.30	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	48.0	3.86e-01	98.8%	58.4%
1t9kA01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.54	40.0	3.38e-01	78.6%	56.4%
1jr8A00	1.20.120.310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain	0.53	41.0	3.84e-01	82.1%	96.2%
3tu3B03	1.20.1050.100	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	45.0	3.60e-01	96.4%	59.4%
1lxlA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.51	44.0	3.33e-01	98.8%	41.6%
4maaA01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.50	38.0	3.00e-01	84.5%	77.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3237844	611.3.1.4 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Pes-10	0.56	33.0	3.10e-01	70.2%	47.6%
3583180	1016.1.1.2 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Caprin-1_dimer	0.54	49.0	4.28e-01	100.0%	83.2%
3712638	3187.1.1.0 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein	0.51	42.0	3.54e-01	91.7%	58.0%
3744818	101.1.1.213 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H	0.50	34.0	3.55e-01	70.2%	92.0%