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putative_helicase

Euk-Vir

Melbournevirus

putative_helicase__YP_009094536__Melbournevirus__1560514

Identity

Accession:: YP_009094536 ↗
Protein ID:: putative_helicase
Kingdom:: euk

Quality

77.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-191

PDB

Domain cluster: rep: putative_helicase__YP_009238527__Brazilian_marseillevirus__1813599__D17-175_881-925

D2 high residues 370-457

PDB

D3 medium residues 207-270_315-354

PDB

Domain cluster: rep: origin_of_replication-binding_protein__YP_009345590__Noumeavirus__1955558__D218-251_266-281_328-352

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m55A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.63	43.0	3.55e-01	70.2%	83.9%
3g8qA02	3.30.70.1940	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	37.0	4.16e-01	76.9%	85.0%
3mtiB00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	28.0	2.35e-01	90.4%	27.2%
3dnhA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.50	36.0	3.21e-01	73.1%	77.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014006	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.58	40.0	4.35e-01	83.7%	87.1%
4538961	304.14.1.1 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR	0.57	38.0	4.37e-01	76.0%	94.7%
4224503	2492.1.1.9 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC	0.54	33.0	3.07e-01	76.0%	46.6%
3176992	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.51	41.0	2.95e-01	89.4%	86.1%

D4 medium residues 492-638

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	53.8	1.30e-14	96.6%	18.3%

D5 medium residues 648-776_843-877

PDB

Domain cluster: rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	35.6	4.50e-09	77.4%	9.8%

D6 medium residues 777-842

PDB

Domain cluster: rep: hypothetical_protein_GMAR_ORF257__YP_009310374__Golden_Marseillevirus__1720526__D772-829

D7 medium residues 878-937

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1f45B00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.63	47.0	3.68e-01	81.7%	90.2%
2bcoA01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.54	40.0	2.64e-01	81.7%	33.0%
1vt0M05	6.10.280.90	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	38.0	3.58e-01	86.7%	62.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4011463	2006.1.3.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain	0.71	49.0	3.44e-01	71.7%	53.1%
3214114	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.60	46.0	3.18e-01	83.3%	86.5%
4528788	2007.2.1.2 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2	0.55	41.0	2.82e-01	80.0%	30.2%

D8 medium residues 938-1098

PDB

Domain cluster: rep: putative_helicase__YP_009238527__Brazilian_marseillevirus__1813599__D933-1071