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putative_helicase

Euk-Vir

Brazilian_marseillevirus

putative_helicase__YP_009238676__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238676 ↗
Protein ID:
putative_helicase
Kingdom:
euk

Quality

77.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-188
PDB
Domain cluster: rep: putative_helicase__YP_009238527__Brazilian_marseillevirus__1813599__D17-175_881-925
D2 high residues 193-332
PDB
Domain cluster: rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
D3 high residues 365-435
PDB
Domain cluster: rep: origin_of_replication-binding_protein__YP_009345580__Noumeavirus__1955558__D365-435
D4 high residues 481-623
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 66.6 1.80e-18 100.0% 18.2%
D5 high residues 633-759_820-851
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 39.3 3.20e-10 84.3% 14.3%
D6 medium residues 760-819
PDB
Domain cluster: rep: hypothetical_protein_GMAR_ORF257__YP_009310374__Golden_Marseillevirus__1720526__D772-829
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 57.0 4.44e-01 100.0% 53.9%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.72e-01 93.3% 87.8%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 46.0 4.45e-01 86.7% 70.1%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 49.0 3.81e-01 100.0% 42.2%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.52e-01 96.7% 85.2%
2db0B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 39.0 2.57e-01 70.0% 27.5%
2aeaA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 46.0 3.06e-01 90.0% 43.0%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.86e-01 88.3% 87.1%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.92e-01 86.7% 88.2%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.55 44.0 3.50e-01 88.3% 46.5%
5ar1A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.11e-01 93.3% 72.6%
1hi8A02 1.10.490.60 Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain 0.54 36.0 2.77e-01 70.0% 58.3%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.53 43.0 3.77e-01 98.3% 95.1%
4qozC00 1.10.8.1120 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone RNA hairpin-binding protein RNA-binding domain 0.53 38.0 3.52e-01 98.3% 61.6%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.66e-01 98.3% 64.9%
5bu6A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.52 45.0 2.93e-01 96.7% 38.6%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.52 39.0 3.53e-01 88.3% 58.9%
2p2sA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 2.99e-01 91.7% 71.9%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 43.0 2.90e-01 95.0% 77.3%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 41.0 3.53e-01 91.7% 87.4%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 42.0 3.02e-01 90.0% 59.8%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 39.0 3.48e-01 95.0% 83.0%
3rimB01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 40.0 2.62e-01 98.3% 84.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3295046 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.71 40.0 3.08e-01 91.7% 26.4%
3548677 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.71 46.0 3.12e-01 90.0% 18.2%
3993781 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 43.0 2.86e-01 98.3% 16.7%
3282393 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 57.0 4.29e-01 98.3% 64.8%
3310887 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.62 55.0 4.33e-01 100.0% 82.4%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.62 46.0 4.12e-01 86.7% 55.6%
3968852 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.62 54.0 4.04e-01 100.0% 65.3%
None — 0.61 48.0 2.80e-01 90.0% 21.8%
3596697 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 46.0 3.80e-01 90.0% 45.5%
5027858 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 52.0 4.13e-01 98.3% 90.8%
5018928 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 52.0 4.03e-01 100.0% 70.4%
5017955 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 52.0 4.01e-01 100.0% 71.1%
3236856 174.1.1.50 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807 0.59 48.0 3.64e-01 100.0% 37.1%
3471523 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.59 46.0 2.98e-01 91.7% 18.5%
4013299 109.4.1.1304 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 0.59 40.0 2.38e-01 71.7% 21.6%
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.59 42.0 3.79e-01 90.0% 54.1%
3223453 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.58 49.0 4.10e-01 95.0% 68.6%
3867816 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.58 48.0 4.01e-01 95.0% 68.2%
4534098 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.58 42.0 3.15e-01 81.7% 47.4%
3877553 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.58 49.0 4.15e-01 95.0% 74.0%
5031515 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.58 42.0 3.64e-01 78.3% 83.2%
None — 0.57 32.0 3.24e-01 96.7% 51.7%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 41.0 4.25e-01 86.7% 83.6%
3993742 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 47.0 3.77e-01 100.0% 48.9%
3358676 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.56 47.0 3.54e-01 100.0% 61.2%
4151824 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.56 48.0 3.61e-01 98.3% 65.2%
None — 0.56 47.0 4.02e-01 98.3% 72.4%
2630137 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.56 43.0 3.16e-01 100.0% 31.4%
3730487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.52e-01 95.0% 65.5%
3467577 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.55 36.0 2.97e-01 96.7% 34.2%
5008813 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.22e-01 88.3% 89.7%
5042767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.00e-01 100.0% 94.9%
3224878 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.54 44.0 3.97e-01 95.0% 81.1%
3736284 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.24e-01 91.7% 56.2%
5049962 1144.1.1.1 ↗ beta sandwiches › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Hydantoinase_B 0.53 38.0 2.52e-01 81.7% 79.4%
3710117 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.76e-01 91.7% 76.7%
3731261 101.1.2.520 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.53 41.0 3.71e-01 93.3% 81.1%
5050695 3352.1.1.15 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 0.52 45.0 2.78e-01 100.0% 25.0%
4020856 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.52 46.0 3.56e-01 100.0% 59.3%
3421266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.04e-01 78.3% 49.2%
4943510 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.52 37.0 3.66e-01 78.3% 83.1%
4679870 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.68e-01 95.0% 77.9%
3650038 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.51 35.0 2.84e-01 76.7% 32.6%
4928371 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.51 41.0 3.67e-01 93.3% 85.6%
5006819 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 40.0 3.58e-01 93.3% 78.9%
4221720 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 43.0 2.96e-01 100.0% 83.3%
D7 medium residues 960-1089
PDB
Domain cluster: rep: hypothetical_protein_GMAR_ORF3__YP_009310120__Golden_Marseillevirus__1720526__D249-342