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putative_inclusion_body_protein
Euk-VirSweet_potato_collusive_virus
putative_inclusion_body_protein__YP_004347416__Sweet_potato_collusive_virus__930168
Identity
- Accession:
- YP_004347416 ↗
- Protein ID:
- putative_inclusion_body_protein
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Cavemovirus›
Sweet_potato_collusive_virus
TaxID: 930168
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 87-136_150-160_181-212
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 43.0 | 3.09e-01 | 76.3% | 80.3% |
| 4xjxA04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.88e-01 | 82.8% | 65.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484674 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 45.0 | 3.72e-01 | 78.5% | 69.7% |
| 4491239 | 109.4.1.318 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › mit_SMPDase | 0.53 | 42.0 | 2.66e-01 | 84.9% | 42.9% |
| 3499765 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 2.93e-01 | 82.8% | 58.5% |
D2
medium
residues 213-355
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4agsA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 38.0 | 3.93e-01 | 79.0% | 85.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3821 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.52 | 32.0 | 3.54e-01 | 73.4% | 78.4% |
| 3656558 | 109.4.1.1493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C, ZW10_C2 | 0.50 | 43.0 | 2.82e-01 | 95.1% | 29.3% |
| 4022228 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.50 | 39.0 | 3.84e-01 | 81.1% | 94.0% |